TkA07G022270 | RubberDandelionOmics

Gene overview

TkA07G022270

Reference: TK1151 Chr: Chr07 Coordinates: 6062870-6075945 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2510 bp · TkA07G022270|TK1151|cDNA

TTTAATTTGTGGATATTACCAACTCCGGTATATAATCAATCACCAATCCATATGGAAAACAACAATACATAATCTGTCATGCATGCCAAATAAAACATCAAAACACACATACTGACATAGCAAAAAATGGGAGAACCAGACGGCTTATTTGAAACCAAGAAAGCTAAAAGAAGAACCTTGTTCAAGCTTTATGCATCATCAATGGCGATGGCTATAATCTTAATATGTGTTTATAGAGCAACCCACATACCCGAAAATGG...

CDS

Download CDS FASTA

2277 bp · TkA07G022270|TK1151|CDS

ATGCCATATAAAACACGAAAACACACACACATACACACACATCAAAAGATGGGAGAACAATTACCAGACCACTTTCCTTTATTTGAAACCAAGAAAGCTAAGAGAAGGACCTTGTTCAAGCTTTATGCGTCATCAATGGCGATTGCTATATCTTCTATATGTGTTTACAGAGCAACCCATATACCCGAAATTAGCAAAACCGGAAGATATTTATGGATCGGGTTGTTCATGGCGGAGCTATGGTTCACCTTATACTGGCT...

Protein

Download Protein FASTA

758 aa · TkA07G022270|TK1151|PROTEIN

MPYKTRKHTHIHTHQKMGEQLPDHFPLFETKKAKRRTLFKLYASSMAIAISSICVYRATHIPEISKTGRYLWIGLFMAELWFTLYWLITQLVRWNPVTHKTFKDKLSQKYEKVLPGVDIFVCTADAVIEPPLMVINTVLSMMAYDYPPEKVNVYLSDDGGSELTFYAVLEASRFCKFWLPFCKRYKIEPRSPSAYFARASPINNEWLSIKNRYEEMRKRIDDATRLGKVAEELRKDHKGFQEWDFGSNKNDHQPIIQLLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G022270`
TK1151 ID	TkA07G022270
OH-1004 ID	LXL04_026975
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.300
Protein coverage (%)	TK1151 99.077 / OH-1004 51.145 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G022270

Location Chr07:6062870-6075945 (-)

Description Similar to CSLE6: Cellulose synthase-like protein E6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55850`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g23990`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q651X6`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`Os09g0478100`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`Os02g0725300`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026975 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

KEGG gene cross-reference

dosa:Os02g0725300

dosa:Os09g0478100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.373

Rank 1 · TkA07G022270 · TK1151

Endoplasmic reticulum0.290

Rank 2 · TkA07G022270 · TK1151

Golgi apparatus0.216

Rank 3 · TkA07G022270 · TK1151

Cytoplasm0.156

Rank 4 · TkA07G022270 · TK1151

Lysosome / Vacuole0.126

Rank 5 · TkA07G022270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03552Cellulose_synt117-414 aa

PF29148YPP1_N401-451 aa

PF03552Cellulose_synt439-755 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G022270	`PF03552`	Cellulose_synt	117	414	5e-127	426.1
TkA07G022270	`PF29148`	YPP1_N	401	451	0.14	12.5
TkA07G022270	`PF03552`	Cellulose_synt	439	755	5e-127	426.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VZK9`	Arabidopsis thaliana	sp\|Q8VZK9\|CSLE1_ARATH Cellulose synthase-like protein E1	51.500%	Swiss-Prot	High
`Q0WVN5`	Arabidopsis thaliana	sp\|Q0WVN5\|CSLG3_ARATH Cellulose synthase-like protein G3	36.600%	Swiss-Prot	Medium
`Q651X6`	Oryza sativa subsp. japonica	sp\|Q651X6\|CSLE6_ORYSJ Cellulose synthase-like protein E6	54.500%	Swiss-Prot	High
`Q651X7`	Oryza sativa subsp. japonica	sp\|Q651X7\|CSLE1_ORYSJ Cellulose synthase-like protein E1	54.100%	Swiss-Prot	High
`Q0DXZ1`	Oryza sativa subsp. japonica	sp\|Q0DXZ1\|CSLE2_ORYSJ Cellulose synthase-like protein E2	50.500%	Swiss-Prot	High

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