TkA07G022190 | RubberDandelionOmics

Gene overview

TkA07G022190

Reference: TK1151 Chr: Chr07 Coordinates: 6029230-6032408 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1666 bp · TkA07G022190|TK1151|cDNA

GTAATCTCCGTACCTCAAAACTTCCGCCCTTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCACACACACATACAGTCATACTCCTCCCTAACAGACGAGATGGCCACCAACAAACGAACAAAGAACACGCACAAATTTTATATATATAAACTTCTCATCAGGCGATAGATGTAGAGAGAGAAAGTAGTGAGAGAAGCAAAGCCAATACTCTCTTTCTTCTTGCATATATATGAATACACACAACAA...

CDS

Download CDS FASTA

714 bp · TkA07G022190|TK1151|CDS

ATGGAGGACAGAGTAGGAGGCGGCGGCGGATCATTTGTTGCAGTTAGGAGGATTTCACATGGACTTGATAGAAGCAACACCTGCAATACAACTTCAGCTGAGGTTGCAGCAGGCTCAGCAGCATGGCTTGGAAAAGGACTCTCGTGTGTTTGTGTTCAGGGGAGAGAAGGTGACTCTCGTCCATCATTTGACTTATCTCCTGCCCAGGAAGATTGCTTACAAAGGCTGCAAAACCGTTTAGATGTTGCCTATGATAGTTC...

Protein

Download Protein FASTA

237 aa · TkA07G022190|TK1151|PROTEIN

MEDRVGGGGGSFVAVRRISHGLDRSNTCNTTSAEVAAGSAAWLGKGLSCVCVQGREGDSRPSFDLSPAQEDCLQRLQNRLDVAYDSSITEHQLALRALWKAAFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLRKREGVRSMWEYPFAVAGVNITFMLIQMLDLEAVKPRSFVGATFLKFLSENELAFDLLYCITFKLMDHQWLSMRASYMDFN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G022190`
TK1151 ID	TkA07G022190
OH-1004 ID	LXL04_026969
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 87.778 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G022190`
Location	Chr07:6029230-6032408 (+)
Description	Similar to elmoA: ELMO domain-containing protein A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026969` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007015 actin filament organization Biological Process GO:0030837 negative regulation of actin filament polymerization Biological Process GO:0048870 cell motility Biological Process GO:0050688 regulation of defense response to virus Biological Process GO:0050764 regulation of phagocytosis Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0005096 GTPase activator activity Molecular Function GO:0045159 myosin II binding Molecular Function
KEGG gene cross-reference	bta:515278 ddi:DDB_G0278051 ddi:DDB_G0280179 ddi:DDB_G0280943 ddi:DDB_G0282949 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.462

Rank 1 · TkA07G022190 · TK1151

Nucleus0.293

Rank 2 · TkA07G022190 · TK1151

Cell membrane0.198

Rank 3 · TkA07G022190 · TK1151

Golgi apparatus0.171

Rank 4 · TkA07G022190 · TK1151

Endoplasmic reticulum0.148

Rank 5 · TkA07G022190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04727ELMO_CED1275-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G022190	`PF04727`	ELMO_CED12	75	237	4e-52	177.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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