TkA07G018270 | RubberDandelionOmics

Gene overview

TkA07G018270

Reference: TK1151 Chr: Chr07 Coordinates: 4904975-4907814 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1700 bp · TkA07G018270|TK1151|cDNA

TACTTTCCTACACATATAAGGAAACAAAATTCGCTCTATCTCTCTCCACATGTAATAAAAAAAGAATCCCCATGTGGTTCTTTTTTAAAACCTAAATTTCCTCCATTACCACCATACTTTATTATTCTTCGTCTCTTTCTCCCTGTTCCTCTCTTTTTCTACCTCAACATGGCTACCAACAACTTAGACTTGGGTTCCACTTCCCCTTTCAACCTCCAACAAACCCTCCACCACCGCCCTGATCTCCACCTTCAAATCCC...

CDS

Download CDS FASTA

1059 bp · TkA07G018270|TK1151|CDS

TACTTTCCTACACATATAAGGAAACAAAATTCGCTCTATCTCTCTCCACATGTAATAAAAAAAGAATCCCCATGTGGTTCTTTTTTAAAACCTAAATTTCCTCCATTACCACCATACTTTATTATTCTTCGTCTCTTTCTCCCTGTTCCTCTCTTTTTCTACCTCAACATGGCTACCAACAACTTAGACTTGGGTTCCACTTCCCCTTTCAACCTCCAACAAACCCTCCACCACCGCCCTGATCTCCACCTTCAAATCCC...

Protein

Download Protein FASTA

352 aa · TkA07G018270|TK1151|PROTEIN

YFPTHIRKQNSLYLSPHVIKKESPCGSFLKPKFPPLPPYFIILRLFLPVPLFFYLNMATNNLDLGSTSPFNLQQTLHHRPDLHLQIPQDSDQDDANQHTPGSGDGSGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEISSGCDVFESVADYARKRQRGICIVSGSGTVNNVSLRQPAAAGSVVTLHGRFEILSLSGSFLPHPAPPGATSLTIYLAGGQGQVVGGNVVGALVASGPVIVIAASFTNVAYERLPLDEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G018270`
TK1151 ID	TkA07G018270
OH-1004 ID	LXL04_026920
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.200
Protein coverage (%)	TK1151 84.091 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA07G018270

Location Chr07:4904975-4907814 (+)

Description Similar to AHL21: AT-hook motif nuclear-localized protein 21

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17800`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At2g35270`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At4g22810`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release
`At2g45430`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	Over-expression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana.2009 · DOI: 10.1007/s11103-009-9507-9 The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis.2012 · DOI: 10.1074/jbc.m111.318477
`At4g12050`	Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026920 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009640 photomorphogenesis Biological Process

GO:0009908 flower development Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0045824 negative regulation of innate immune response Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0048440 carpel development Biological Process

GO:0048653 anther development Biological Process

KEGG gene cross-reference

ath:AT1G76500

ath:AT2G35270

ath:AT2G42940

ath:AT4G14465

ath:AT4G17800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.878

Rank 1 · TkA07G018270 · TK1151

Cytoplasm0.188

Rank 2 · TkA07G018270 · TK1151

Endoplasmic reticulum0.041

Rank 3 · TkA07G018270 · TK1151

Cell membrane0.041

Rank 4 · TkA07G018270 · TK1151

Plastid0.020

Rank 5 · TkA07G018270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10961SelK_SelG88-121 aa

PF03479PCC130-248 aa

PF10961SelK_SelG265-280 aa

PF10961SelK_SelG308-327 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G018270	`PF10961`	SelK_SelG	88	121	6.5	8.1
TkA07G018270	`PF03479`	PCC	130	248	4.9e-32	111.2
TkA07G018270	`PF10961`	SelK_SelG	265	280	6.5	8.1
TkA07G018270	`PF10961`	SelK_SelG	308	327	6.5	8.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O23620`	Arabidopsis thaliana	sp\|O23620\|AHL23_ARATH AT-hook motif nuclear-localized protein 23	85.600%	Swiss-Prot	Low
`O82166`	Arabidopsis thaliana	sp\|O82166\|AHL21_ARATH AT-hook motif nuclear-localized protein 21	82.500%	Swiss-Prot	Low
`O49662`	Arabidopsis thaliana	sp\|O49662\|AHL24_ARATH AT-hook motif nuclear-localized protein 24	71.300%	Swiss-Prot	Low
`O22130`	Arabidopsis thaliana	sp\|O22130\|AHL22_ARATH AT-hook motif nuclear-localized protein 22	70.900%	Swiss-Prot	Low
`Q9SZ70`	Arabidopsis thaliana	sp\|Q9SZ70\|AHL26_ARATH AT-hook motif nuclear-localized protein 26	70.300%	Swiss-Prot	Low

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