TkA07G016920 | RubberDandelionOmics

Gene overview

TkA07G016920

Reference: TK1151 Chr: Chr07 Coordinates: 4581940-4587784 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · TkA07G016920|TK1151|cDNA

CAAACCCTTGTGATTGTGAACTTACCGTCGCATTCCGTTCAGCAAGCTACGAACAAAATTAGGCAAAATCAGTTCCTCCCGTCGCATCTTCCTGATCCGCTGCTGTTTCCGATTCCCGTGGTAGCAGTCGCCAAGTGCCGCCGTTTATCTCGCCGGAGCAACAGAGCATCGACCCTTCTACATTTATCTCACTGGAACACTTCTCCCCAACAAGATATGGGAAAGAAGCACAAAAAGGATATCGCAGACGTTTCAATGGA...

CDS

Download CDS FASTA

1506 bp · TkA07G016920|TK1151|CDS

CAAACCCTTGTGATTGTGAACTTACCGTCGCATTCCGTTCAGCAAGCTACGAACAAAATTAGGCAAAATCAGTTCCTCCCGTCGCATCTTCCTGATCCGCTGCTGTTTCCGATTCCCGTGGTAGCAGTCGCCAAGTGCCGCCGTTTATCTCGCCGGAGCAACAGAGCATCGACCCTTCTACATTTATCTCACTGGAACACTTCTCCCCAACAAGATATGGGAAAGAAGCACAAAAAGGATATCGCAGACGTTTCAATGGA...

Protein

Download Protein FASTA

501 aa · TkA07G016920|TK1151|PROTEIN

QTLVIVNLPSHSVQQATNKIRQNQFLPSHLPDPLLFPIPVVAVAKCRRLSRRSNRASTLLHLSHWNTSPQQDMGKKHKKDIADVSMEEDDNHNNTPEQSLKKKQKNKKIRKREEPIDVKVETINGTSDKSLPLIGYFPSGYDPEKRPPKIRVLKHKKRTNRLQIVVTPKKSSNMNFIGTNYSGEGAVPQVCSYALGVLDKQTQTLKIVQIEANKIFRLEPNFGDRENTVDEASKETENKLTVEDTNELKYNFSTKKSERA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G016920`
TK1151 ID	TkA07G016920
OH-1004 ID	LXL04_024429
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.900
Protein coverage (%)	TK1151 85.629 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G016920`
Location	Chr07:4581940-4587784 (-)
Description	Similar to rpa49: DNA-directed RNA polymerase I subunit rpa49 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024429` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0001188 RNA polymerase I preinitiation complex assembly Biological Process GO:0006360 transcription by RNA polymerase I Biological Process GO:0006361 transcription initiation at RNA polymerase I promoter Biological Process GO:0006362 transcription elongation by RNA polymerase I Biological Process GO:0006363 termination of RNA polymerase I transcription Biological Process GO:0042790 nucleolar large rRNA transcription by RNA polymerase I Biological Process GO:0001650 fibrillar center Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005736 RNA polymerase I complex Cellular Component GO:0001179 RNA polymerase I general transcription initiation factor binding Molecular Function
KEGG gene cross-reference	ddi:DDB_G0290909 hsa:64425 spo:2541914 xla:444759 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.945

Rank 1 · TkA07G016920 · TK1151

Cytoplasm0.117

Rank 2 · TkA07G016920 · TK1151

Mitochondrion0.019

Rank 3 · TkA07G016920 · TK1151

Cell membrane0.018

Rank 4 · TkA07G016920 · TK1151

Endoplasmic reticulum0.009

Rank 5 · TkA07G016920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06870RNA_pol_I_A49155-493 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G016920	`PF06870`	RNA_pol_I_A49	155	493	2.8e-49	168.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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