TkA07G008300 | RubberDandelionOmics

Gene overview

TkA07G008300

Reference: TK1151 Chr: Chr07 Coordinates: 2302062-2306281 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1719 bp · TkA07G008300|TK1151|cDNA

ATGGTTCCAGTGTGTAGGAATGCAAAAAGATATGCATTGTCTGAGATAGAAGGTAGTTTGAGAGAACATTATGCTAAGCTTTGGGATTATGGCAATGAAATCAAAAGGGCAAATCCTGGTTCAACTGTTAGGATGGAAGTTGATATCCAGCCTGATTCAACAACCATTTTCTCTCAATATTATGTTTGCTTTAAGGGGTTAAGGGATGGTTGGGTACAAGGCTGTAGAAAAATCATATGTATTGATGGCTATTTTCTGAA...

CDS

Download CDS FASTA

1719 bp · TkA07G008300|TK1151|CDS

ATGGTTCCAGTGTGTAGGAATGCAAAAAGATATGCATTGTCTGAGATAGAAGGTAGTTTGAGAGAACATTATGCTAAGCTTTGGGATTATGGCAATGAAATCAAAAGGGCAAATCCTGGTTCAACTGTTAGGATGGAAGTTGATATCCAGCCTGATTCAACAACCATTTTCTCTCAATATTATGTTTGCTTTAAGGGGTTAAGGGATGGTTGGGTACAAGGCTGTAGAAAAATCATATGTATTGATGGCTATTTTCTGAA...

Protein

Download Protein FASTA

572 aa · TkA07G008300|TK1151|PROTEIN

MVPVCRNAKRYALSEIEGSLREHYAKLWDYGNEIKRANPGSTVRMEVDIQPDSTTIFSQYYVCFKGLRDGWVQGCRKIICIDGYFLKGIGRGELLAAVGRDSNNHIFPLAWAVVNVETKEAWKWFLDLLMDDIDGGNGTGLTIMSDGHKGLAEAVKERVGEVEHRLCARHILANFNNQFKGEHYMRDPKCFCRAYQKEGMNCDAVENEVSESFNSAILDARRLPIIAMLEKIRVYAMQRLYYQKQKGESWDLTICPAIRK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G008300`
TK1151 ID	TkA07G008300
OH-1004 ID	LXL04_006308
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	56.200
Protein coverage (%)	TK1151 74.825 / OH-1004 47.474 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G008300`
Location	Chr07:2302062-2306281 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006308` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.943

Rank 1 · TkA07G008300 · TK1151

Cytoplasm0.115

Rank 2 · TkA07G008300 · TK1151

Cell membrane0.024

Rank 3 · TkA07G008300 · TK1151

Mitochondrion0.018

Rank 4 · TkA07G008300 · TK1151

Endoplasmic reticulum0.015

Rank 5 · TkA07G008300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10551MULE78-174 aa

PF00872Transposase_mut109-183 aa

PF04434SWIM188-202 aa

PF10551MULE202-218 aa

PF10551MULE281-297 aa

PF04434SWIM292-320 aa

PF28211GlpR425-556 aa

PF00872Transposase_mut502-562 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G008300	`PF10551`	MULE	78	174	1.1e-16	61.7
TkA07G008300	`PF00872`	Transposase_mut	109	183	8.6e-06	25.6
TkA07G008300	`PF04434`	SWIM	188	202	1.1e-07	31.9
TkA07G008300	`PF10551`	MULE	202	218	1.1e-16	61.7
TkA07G008300	`PF10551`	MULE	281	297	1.1e-16	61.7
TkA07G008300	`PF04434`	SWIM	292	320	1.1e-07	31.9
TkA07G008300	`PF28211`	GlpR	425	556	0.51	11.1
TkA07G008300	`PF00872`	Transposase_mut	502	562	8.6e-06	25.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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