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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G005860
Reference: TK1151 Chr: Chr07 Coordinates: 1651122-1652573 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

927 bp · TkA07G005860|TK1151|cDNA

ATGGACTCGTTGCCCGAAGCCATCATCCAATACATCTTATCAAACATAACAAACGCGAAAGACATAGCCTCATGCAATTGCGTATCCAACAAATTCAAAGACTCAATGCATTACATCACAAGCGTCTACTTCCCTCGTAGCATCTTCGACAATTTACCACACACTCAAACTCCCGACCACATAATAACCCAAATCCTCTCTTCAATTTCACATCTTCAAAACCTCATAGTCTATTCCCCCTTCACCGCCACAGCTCTCGA...

CDS

Download CDS FASTA

927 bp · TkA07G005860|TK1151|CDS

ATGGACTCGTTGCCCGAAGCCATCATCCAATACATCTTATCAAACATAACAAACGCGAAAGACATAGCCTCATGCAATTGCGTATCCAACAAATTCAAAGACTCAATGCATTACATCACAAGCGTCTACTTCCCTCGTAGCATCTTCGACAATTTACCACACACTCAAACTCCCGACCACATAATAACCCAAATCCTCTCTTCAATTTCACATCTTCAAAACCTCATAGTCTATTCCCCCTTCACCGCCACAGCTCTCGA...

Protein

Download Protein FASTA

308 aa · TkA07G005860|TK1151|PROTEIN

MDSLPEAIIQYILSNITNAKDIASCNCVSNKFKDSMHYITSVYFPRSIFDNLPHTQTPDHIITQILSSISHLQNLIVYSPFTATALDSWLLLVGPTLKTLELRMDNLVDLNSSNESVSKLECLQSARNLESLKLWSVFMVRSPNWDVFENLKNLEIVGAKLEDLVLVEALKSTPNLTQLVLLGCEGLGSVWIELLELEDCKLDFYGLGSCSLTIRAPKIRNLEVQGCNWIRVLETNCLKNLSIANNAGRVYMVECGKLMA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA07G005860
TK1151 IDTkA07G005860
OH-1004 IDLXL04_026754
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 87.987 / OH-1004 71.316
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G005860
LocationChr07:1651122-1652573 (-)
DescriptionSimilar to At1g10780: F-box protein At1g10780
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g10780 F-box protein At1g10780. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G10780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.850
Rank 1 · TkA07G005860 · TK1151
Cytoplasm0.184
Rank 2 · TkA07G005860 · TK1151
Endoplasmic reticulum0.045
Rank 3 · TkA07G005860 · TK1151
Cell membrane0.043
Rank 4 · TkA07G005860 · TK1151
Plastid0.019
Rank 5 · TkA07G005860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like1-34 aa
PF29466F-box_COS1112-36 aa
PF00060Lig_chan30-140 aa
PF29466F-box_COS11157-76 aa
PF12937F-box-like58-69 aa
PF23622LRR_At1g61320_AtMIF181-251 aa
PF24758LRR_At5g5637085-141 aa
PF25019LRR_R13L1-DRL2196-181 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA07G005860PF12937F-box-like1340.0001622.1
TkA07G005860PF29466F-box_COS1112360.01516.6
TkA07G005860PF00060Lig_chan301400.1712.4
TkA07G005860PF29466F-box_COS11157760.01516.6
TkA07G005860PF12937F-box-like58690.0001622.1
TkA07G005860PF23622LRR_At1g61320_AtMIF1812518.6e-0522.8
TkA07G005860PF24758LRR_At5g56370851410.09113.1
TkA07G005860PF25019LRR_R13L1-DRL21961814.1e-0627.4
TkA07G005860PF14580LRR_91021820.3111.3
TkA07G005860PF24758LRR_At5g563701231940.09113.1
TkA07G005860PF25019LRR_R13L1-DRL211652024.1e-0627.4
TkA07G005860PF25019LRR_R13L1-DRL212282684.1e-0627.4
TkA07G005860PF24758LRR_At5g563702292580.09113.1
TkA07G005860PF29466F-box_COS1112872970.01516.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAC4Arabidopsis thalianasp|Q9SAC4|FB2_ARATH F-box protein At1g1078054.100%Swiss-ProtHigh

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