TkA07G001470 | RubberDandelionOmics

Gene overview

TkA07G001470

Reference: TK1151 Chr: Chr07 Coordinates: 381541-385735 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

792 bp · TkA07G001470|TK1151|cDNA

ATGTCTGCAATTGAGACTTGTGAGGACAACCTGAACTTAGTTCCAGAAGACTTGACGCGTGCAGCAGCACAGTTGAAGTCTACTCAGCCCGATGAGATTGGTGCCAAGATGGCAAATGCAACACCTAACGAGTTTGCTTCTATGCAATCGCGAGTAGATGCACAGATAAATTATCAGTTAAATGCCAACCTAAATGCTGAAACAAAAGGAATGAGCTTCACAGTCAGGGAAGAAAAAGTTTACTATAGTTTCGATGAAGC...

CDS

Download CDS FASTA

792 bp · TkA07G001470|TK1151|CDS

ATGTCTGCAATTGAGACTTGTGAGGACAACCTGAACTTAGTTCCAGAAGACTTGACGCGTGCAGCAGCACAGTTGAAGTCTACTCAGCCCGATGAGATTGGTGCCAAGATGGCAAATGCAACACCTAACGAGTTTGCTTCTATGCAATCGCGAGTAGATGCACAGATAAATTATCAGTTAAATGCCAACCTAAATGCTGAAACAAAAGGAATGAGCTTCACAGTCAGGGAAGAAAAAGTTTACTATAGTTTCGATGAAGC...

Protein

Download Protein FASTA

263 aa · TkA07G001470|TK1151|PROTEIN

MSAIETCEDNLNLVPEDLTRAAAQLKSTQPDEIGAKMANATPNEFASMQSRVDAQINYQLNANLNAETKGMSFTVREEKVYYSFDEAIDDRNGSYSVEFLNSLTVGGLPPHYLRLKVGCPVILLRNIDPGNGLCNGTRLICRSFQPHVIDAEIAVGQHAGKRVFLPSIPLSPSDDDMFPFKLKRKQFPVRLCFAMTINKAQGQTIPNVGVYLPEPVFSHGQLYVALSRGISRGNTKVLVKSVEKSNVDEVYTSNVIYKEV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G001470`
TK1151 ID	TkA07G001470
OH-1004 ID	LXL04_032813
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 71.103 / OH-1004 17.793 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA07G001470`
Location	Chr07:381541-385735 (-)
Description	Similar to CLV2: Receptor-like protein CLAVATA2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_032813` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0007165 signal transduction Biological Process GO:0009653 anatomical structure morphogenesis Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0009908 flower development Biological Process GO:0009909 regulation of flower development Biological Process GO:0010075 regulation of meristem growth Biological Process GO:0010078 maintenance of root meristem identity Biological Process GO:0010088 phloem development Biological Process GO:0030154 cell differentiation Biological Process GO:0040008 regulation of growth Biological Process GO:0045595 regulation of cell differentiation Biological Process GO:0048507 meristem development Biological Process
KEGG gene cross-reference	ath:AT1G65380 dosa:Os04g0576900 osa:4336741 zma:542675 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.492

Rank 1 · TkA07G001470 · TK1151

Nucleus0.363

Rank 2 · TkA07G001470 · TK1151

Peroxisome0.087

Rank 3 · TkA07G001470 · TK1151

Mitochondrion0.055

Rank 4 · TkA07G001470 · TK1151

Plastid0.038

Rank 5 · TkA07G001470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13538UvrD_C_218-25 aa

PF21530Pif1_2B_dom98-141 aa

PF01443Viral_helicase1190-228 aa

PF13538UvrD_C_2192-228 aa

PF02689Herpes_Helicase193-246 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G001470	`PF13538`	UvrD_C_2	18	25	0.00082	19.9
TkA07G001470	`PF21530`	Pif1_2B_dom	98	141	2.7e-20	72.5
TkA07G001470	`PF01443`	Viral_helicase1	190	228	0.14	12.7
TkA07G001470	`PF13538`	UvrD_C_2	192	228	0.00082	19.9
TkA07G001470	`PF02689`	Herpes_Helicase	193	246	0.01	14.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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