RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA07G000320
Reference: TK1151 Chr: Chr07 Coordinates: 68803-69498 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

513 bp · TkA07G000320|TK1151|cDNA

TGTCTTCTTCATCAGCTTGTAGTCGTTGTGGAAGTGGTTTTCGCTATCGTCGTCCTGTCGGATGTGATTGTAAGGATCCGAAACCTCCAATGGAAAGGGTATCATGGTCGGACTCAAACCCTGGACGGAGGTTCTTCAAACTGCGTCGACTCACTGATCGGAGACGACACAAAAAAATGTGATTTCTTCCAATGGTTTGATCCTGAGCTACCAAACGAACATTACCTAAACTGGGTAAACAAGATTAAGAATGAGCTGAA...

CDS

Download CDS FASTA

513 bp · TkA07G000320|TK1151|CDS

TGTCTTCTTCATCAGCTTGTAGTCGTTGTGGAAGTGGTTTTCGCTATCGTCGTCCTGTCGGATGTGATTGTAAGGATCCGAAACCTCCAATGGAAAGGGTATCATGGTCGGACTCAAACCCTGGACGGAGGTTCTTCAAACTGCGTCGACTCACTGATCGGAGACGACACAAAAAAATGTGATTTCTTCCAATGGTTTGATCCTGAGCTACCAAACGAACATTACCTAAACTGGGTAAACAAGATTAAGAATGAGCTGAA...

Protein

Download Protein FASTA

170 aa · TkA07G000320|TK1151|PROTEIN

CLLHQLVVVVEVVFAIVVLSDVIVRIRNLQWKGYHGRTQTLDGGSSNCVDSLIGDDTKKCDFFQWFDPELPNEHYLNWVNKIKNELKSFKDKSYCGKLIKKVAELEKMNEDIQVQHIVAEREANEGARVQAAEERAKLVFEVFEVEGSWYIEANFGEYVHRQWVCWGQIV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA07G000320
TK1151 IDTkA07G000320
OH-1004 IDLXL04_014043
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)75.900
Protein coverage (%)TK1151 65.294 / OH-1004 11.221
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA07G000320
LocationChr07:68803-69498 (+)
DescriptionSimilar to RAD4: DNA repair protein RAD4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014043 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000720 pyrimidine dimer repair by nucleotide-excision repair Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006298 mismatch repair Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006974 DNA damage response Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0009411 response to UV Biological Process
GO:0009650 UV protection Biological Process
GO:0010224 response to UV-B Biological Process
GO:0010777 meiotic mismatch repair involved in reciprocal meiotic recombination Biological Process
KEGG gene cross-reference
ath:AT5G16630
dme:Dmel_CG8153
hsa:7508
mmu:22591
spo:2542967
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485
Rank 1 · TkA07G000320 · TK1151
Nucleus0.381
Rank 2 · TkA07G000320 · TK1151
Mitochondrion0.114
Rank 3 · TkA07G000320 · TK1151
Cell membrane0.079
Rank 4 · TkA07G000320 · TK1151
Endoplasmic reticulum0.078
Rank 5 · TkA07G000320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser