TkA06G474250 | RubberDandelionOmics

Gene overview

TkA06G474250

Reference: TK1151 Chr: Chr06 Coordinates: 117452315-117456873 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

825 bp · TkA06G474250|TK1151|cDNA

CCTATCTATTTCAGTAAAAGGCCAATACATGAGAACCGATCAAACGTGGATTACGAAGATAGATATGAAACCAATCAGAAGGCTCCATTTCTCCACGTGTCAAAGCAAGAATCAACAAAAGCTAAAAAGAAAAGGAGAAAGACGAGCCCTGAGATAACAGAAAAGGTTGAGGTCGGCTGAGTAGGAAGAATATTTGAAAATGGCGACGGCGTTTGCGGCAGCAACTTCCTCAGGGGCCATCTCCGTCGGTTTACCTCGTC...

CDS

Download CDS FASTA

486 bp · TkA06G474250|TK1151|CDS

ATGGCGACGGCGTTTGCGGCAGCAACTTCCTCAGGGGCCATCTCCGTCGGTTTACCTCGTCTTCCTACAACCACCGCTGTCCGTTGTTCCGCGTTACCACACCTTCCAGCTCGTTCGTTTTCCCCTTCCATCAAACAGGTTTCAGTGTCGCGAAGATCATCTGTGTTCCAGACCAAGGCCTCAGAAGATGCATCATCTGCTCCCGATGCTAATGAGTTGTTCAACGACTTGAAGGAAAAGTGGGACGGACTTGAAAACAA...

Protein

Download Protein FASTA

161 aa · TkA06G474250|TK1151|PROTEIN

MATAFAAATSSGAISVGLPRLPTTTAVRCSALPHLPARSFSPSIKQVSVSRRSSVFQTKASEDASSAPDANELFNDLKEKWDGLENKSTVIVYGGGAVVAIWISSILIGAVNSVPLLPKIFELVGLGYTGWFVYRYLLFKSSRKELATDIESIKKKIAGTE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G474250`
TK1151 ID	TkA06G474250
OH-1004 ID	LXL04_022588
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 51.768 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G474250

Location Chr06:117452315-117456873 (+)

Description Similar to CURT1A: Protein CURVATURE THYLAKOID 1A, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g01150`	Determines thylakoid architecture by inducing membrane curvature.	Arabidopsis CURVATURE THYLAKOID1 proteins modify thylakoid architecture by inducing membrane curvature.2013 · DOI: 10.1105/tpc.113.113118
`At4g38100`	Determines thylakoid architecture by inducing membrane curvature.	No verified direct reference in this release
`At2g46820`	Determines thylakoid architecture by inducing membrane curvature.	No verified direct reference in this release
`At1g52220`	Determines thylakoid architecture by inducing membrane curvature.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022588 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009773 photosynthetic electron transport in photosystem I Biological Process

GO:0090391 granum assembly Biological Process

GO:0097753 membrane bending Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009515 granal stacked thylakoid Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010287 plastoglobule Cellular Component

GO:0030093 chloroplast photosystem I Cellular Component

KEGG gene cross-reference

ath:AT2G46820

ath:AT4G01150

ath:AT4G38100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984

Rank 1 · TkA06G474250 · TK1151

Mitochondrion0.018

Rank 2 · TkA06G474250 · TK1151

Nucleus0.013

Rank 3 · TkA06G474250 · TK1151

Cytoplasm0.011

Rank 4 · TkA06G474250 · TK1151

Cell membrane0.008

Rank 5 · TkA06G474250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21522MreB-like_C69-98 aa

PF14159CAAD76-159 aa

PF21522MreB-like_C145-158 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G474250	`PF21522`	MreB-like_C	69	98	0.26	12.5
TkA06G474250	`PF14159`	CAAD	76	159	4e-31	107.4
TkA06G474250	`PF21522`	MreB-like_C	145	158	0.26	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04616`	Arabidopsis thaliana	sp\|O04616\|CUT1A_ARATH Protein CURVATURE THYLAKOID 1A, chloroplastic	63.300%	Swiss-Prot	High
`Q8LDD3`	Arabidopsis thaliana	sp\|Q8LDD3\|CUT1D_ARATH Protein CURVATURE THYLAKOID 1D, chloroplastic	43.500%	Swiss-Prot	Medium
`Q8LCA1`	Arabidopsis thaliana	sp\|Q8LCA1\|CUT1B_ARATH Protein CURVATURE THYLAKOID 1B, chloroplastic	31.000%	Swiss-Prot	Medium
`Q9M812`	Arabidopsis thaliana	sp\|Q9M812\|CUT1C_ARATH Protein CURVATURE THYLAKOID 1C, chloroplastic	35.900%	Swiss-Prot	Medium

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