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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G473550
Reference: TK1151 Chr: Chr06 Coordinates: 117129357-117135348 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2845 bp · TkA06G473550|TK1151|cDNA

CTCACGTCCGCCATCATTTTGATCACGACGCATCATCTCCGCCATCTCGCATCAATCAGCACTCACCTGAATGCCGGCGTCTCCATCTTTATCCTGAACGCTGCCGTCTCCATCTCAGCCCTGAACGCCGCCGTCTCCATCTCACCCCTCTCTCTGGTGTACACGCTTCTTCGGAGGTGCAGCGTTACACACGCCGATCACATTCTTCATGCTAGAAGTCATGACGCCACGAACATGATGTTCTTCTGTTATTTAGCTTA...

CDS

Download CDS FASTA

2421 bp · TkA06G473550|TK1151|CDS

ATGCAAGAGGTGCAAGAGACTCGAGATGAATATGGGCCACTTGACTTAGACCTAGACGACTTCAAGGGGGACTTCTCATTTGATGCTTTATATGCAAACTTAGTAAATGGGATGTTGCCAGCTTTCGTTGAAGAAGAGATTAACACAATGGAAGGTCTGATTAATGTTACCACCAATGATGCAGTGCCAAGTGGCAAGTCAACACAAGCGCATTCAAGTCCTTTATTTCCTAAAGTAGATGCTTTGTTGTTAATCTTCAA...

Protein

Download Protein FASTA

806 aa · TkA06G473550|TK1151|PROTEIN

MQEVQETRDEYGPLDLDLDDFKGDFSFDALYANLVNGMLPAFVEEEINTMEGLINVTTNDAVPSGKSTQAHSSPLFPKVDALLLIFKDSCTQLYELRKHIDGKLQKLKKDVVSQDSKHRKTLGEIEKGVDAIFSSFARLDSRISSVGQTAAKIGDHLQSADSQRETASQTMELIKYLIEFNSSPGGEGDLIQLSSLFSDDKRVGEAASIAQQLRSFAEEDIGRHGVSMQSGSATASKGLEVAVTNLQEYCNELENKLLTR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G473550
TK1151 IDTkA06G473550
OH-1004 IDLXL04_022611
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G473550
LocationChr06:117129357-117135348 (-)
DescriptionSimilar to SEC10a: Exocyst complex component SEC10a
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g12370 Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. No verified direct reference in this release
At5g12365 Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os12g0238100 Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022611 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0006887 exocytosis Biological Process
GO:0006892 post-Golgi vesicle-mediated transport Biological Process
GO:0006893 Golgi to plasma membrane transport Biological Process
GO:0006904 vesicle docking involved in exocytosis Biological Process
GO:0015031 protein transport Biological Process
GO:0060321 acceptance of pollen Biological Process
GO:0072659 protein localization to plasma membrane Biological Process
GO:0090148 membrane fission Biological Process
GO:0090522 vesicle tethering involved in exocytosis Biological Process
GO:0000145 exocyst Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT5G12370
ddi:DDB_G0287881
dosa:Os12g0238100
hsa:10640
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.497
Rank 1 · TkA06G473550 · TK1151
Golgi apparatus0.401
Rank 2 · TkA06G473550 · TK1151
Lysosome / Vacuole0.181
Rank 3 · TkA06G473550 · TK1151
Cell membrane0.149
Rank 4 · TkA06G473550 · TK1151
Nucleus0.149
Rank 5 · TkA06G473550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20667Sec10_N82-199 aa
PF02646RmuC92-134 aa
PF10392COG5_N94-161 aa
PF06419COG6_N95-175 aa
PF09763Sec3_CC95-164 aa
PF10046BLOC1_296-145 aa
PF20663COG4_N122-181 aa
PF02646RmuC125-172 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G473550PF20667Sec10_N821994.4e-2898.4
TkA06G473550PF02646RmuC921341.68.4
TkA06G473550PF10392COG5_N941610.02915.3
TkA06G473550PF06419COG6_N951750.1912.6
TkA06G473550PF09763Sec3_CC951640.3611.4
TkA06G473550PF10046BLOC1_2961450.1213.5
TkA06G473550PF20663COG4_N1221810.1912.5
TkA06G473550PF02646RmuC1251721.68.4
TkA06G473550PF02831gpW1661820.2312.0
TkA06G473550PF02646RmuC1962641.68.4
TkA06G473550PF07393Sec10_HB2054591.1e-133447.7
TkA06G473550PF10392COG5_N2322700.02915.3
TkA06G473550PF09763Sec3_CC2362550.3611.4
TkA06G473550PF10046BLOC1_22372570.1213.5
TkA06G473550PF06419COG6_N2382640.1912.6
TkA06G473550PF02831gpW2422570.2312.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
X5JA13Arabidopsis thalianasp|X5JA13|SECAA_ARATH Exocyst complex component SEC10a66.500%Swiss-ProtHigh
X5JB51Arabidopsis thalianasp|X5JB51|SECAB_ARATH Exocyst complex component SEC10b66.200%Swiss-ProtHigh
Q2QV94Oryza sativa subsp. japonicasp|Q2QV94|EXOC5_ORYSJ Exocyst complex component 563.200%Swiss-ProtHigh

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