Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2594 bp · TkA06G473210|TK1151|cDNA
GTTTCCTTATCGTTACTTACCGTCTTACCGTAATGTTGTTGTCATTCATCGGAGTTAAAGACTGTTACAATTTCCAATTTTCCATTTATCAGATCTACCGACCTCCGTTTGATAGTCGAAATCCGACCTCCGCATCAAAAACATTTACACACGAATCTTGCTTATCTCGCCGACAATTTCGCTCGAATTTCTCGATTGGAAATCTTCACTAAAAGGGTTAATTGTTGCTCGGTTTTTGATCTCGGTTGATCGGAGGAGAT...
2100 bp · TkA06G473210|TK1151|CDS
ATGTGGAGCACGACTCTTGCGAATTTGAAAGAAAACCTAAATAAAATCGCCTTGGATGTTCACGATGATGACGGTGACAATGATGGGGATGATTATGAGTCGGAGATCTCTAATTCTAGGAACTCTTCGTTTTCTGATCGGAGAACTTCTCTCAATCATGGTCATAGCTTTTCCCCCATGGCCAATGGTCACGATTCGACTTCTAATTCAGAGATTGCACAATACAAATCAGAGATCAAGAGGCTTCAGGACTCAGAGGC...
Protein
Download Protein FASTA699 aa · TkA06G473210|TK1151|PROTEIN
MWSTTLANLKENLNKIALDVHDDDGDNDGDDYESEISNSRNSSFSDRRTSLNHGHSFSPMANGHDSTSNSEIAQYKSEIKRLQDSEAQIKALSVNYAALLKQKEDRISRLNDENSLLKKNLDASRSESLKSSANSPKGSKQKNRTFGKRLQNGVTLREDASANGVTHTNKNNGNSSSEGNEKELLSDLLEEKNKSLARLQLTHDQKVKELQEELDKERGKLGSLQFKFQEEQKLNRSFQDEKSSLKVDKQNMLTEMNKIR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G473210 |
|---|---|
| TK1151 ID | TkA06G473210 |
| OH-1004 ID | LXL04_023636 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 41.100 |
| Protein coverage (%) | TK1151 80.258 / OH-1004 44.763Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G473210 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:117038198-117045113 (+) | |||||||||
| Description | Similar to GC4: Golgin candidate 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0007030 Golgi organization Biological Process GO:0005576 extracellular region Cellular Component GO:0005768 endosome Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0031267 small GTPase binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G46180 ath:AT3G61570 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11365SOGA69-93 aaPF28968PMD1-like80-102 aaPF11365SOGA98-151 aaPF28968PMD1-like189-312 aaPF11365SOGA194-270 aaPF01291LIF_OSM256-284 aaPF28968PMD1-like280-522 aaPF11365SOGA287-346 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G473210 | PF11365 | SOGA | 69 | 93 | 0.063 | 15.1 |
| TkA06G473210 | PF28968 | PMD1-like | 80 | 102 | 7.2e-05 | 23.1 |
| TkA06G473210 | PF11365 | SOGA | 98 | 151 | 0.063 | 15.1 |
| TkA06G473210 | PF28968 | PMD1-like | 189 | 312 | 7.2e-05 | 23.1 |
| TkA06G473210 | PF11365 | SOGA | 194 | 270 | 0.063 | 15.1 |
| TkA06G473210 | PF01291 | LIF_OSM | 256 | 284 | 0.019 | 15.9 |
| TkA06G473210 | PF28968 | PMD1-like | 280 | 522 | 7.2e-05 | 23.1 |
| TkA06G473210 | PF11365 | SOGA | 287 | 346 | 0.063 | 15.1 |
| TkA06G473210 | PF20117 | DUF6507 | 296 | 330 | 1.7 | 9.9 |
| TkA06G473210 | PF01291 | LIF_OSM | 321 | 399 | 0.019 | 15.9 |
| TkA06G473210 | PF20607 | DUF6800 | 347 | 372 | 0.24 | 11.9 |
| TkA06G473210 | PF11365 | SOGA | 351 | 412 | 0.063 | 15.1 |
| TkA06G473210 | PF20117 | DUF6507 | 352 | 371 | 1.7 | 9.9 |
| TkA06G473210 | PF01291 | LIF_OSM | 444 | 479 | 0.019 | 15.9 |
| TkA06G473210 | PF20117 | DUF6507 | 464 | 464 | 1.7 | 9.9 |
| TkA06G473210 | PF11365 | SOGA | 465 | 532 | 0.063 | 15.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.