TkA06G470400 | RubberDandelionOmics

Gene overview

TkA06G470400

Reference: TK1151 Chr: Chr06 Coordinates: 116324293-116326208 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1782 bp · TkA06G470400|TK1151|cDNA

ATGCGTGACAAACGCTCTCTCGGTTCCGGCCGGAGCCGGTGGGACGAAGGCCGGAAATCCAAGGAACAAGTCATTTGGCAGAGGAAAGACAACGGCAAGAATTTCAAAGGGACGAAACAGGGTGGTGGATGGTCCTTCAAGGATGCCACTACTTTCTTCATATCAAATCTGCCGTCGACCTTCGATAGAAAGCACTTGCAGGTTAAACTGGAGACGATTGGAACGATGGTTGATCTTTTCGTCGTCAATCGGAAAGATAA...

CDS

Download CDS FASTA

1782 bp · TkA06G470400|TK1151|CDS

ATGCGTGACAAACGCTCTCTCGGTTCCGGCCGGAGCCGGTGGGACGAAGGCCGGAAATCCAAGGAACAAGTCATTTGGCAGAGGAAAGACAACGGCAAGAATTTCAAAGGGACGAAACAGGGTGGTGGATGGTCCTTCAAGGATGCCACTACTTTCTTCATATCAAATCTGCCGTCGACCTTCGATAGAAAGCACTTGCAGGTTAAACTGGAGACGATTGGAACGATGGTTGATCTTTTCGTCGTCAATCGGAAAGATAA...

Protein

Download Protein FASTA

593 aa · TkA06G470400|TK1151|PROTEIN

MRDKRSLGSGRSRWDEGRKSKEQVIWQRKDNGKNFKGTKQGGGWSFKDATTFFISNLPSTFDRKHLQVKLETIGTMVDLFVVNRKDKHGHQFGFVRYNRVINCDDIVTSLRGVSIDGRRLFAKVASFERKEKNVEKKVDTLAVSGNVSDHIKHAKNYVNINLSRETISRSKELSGKYVAEVINIKALACIKAVLVGAGISQNCVDYLGGMWILLSIKTEDDKIKLLDDSFVKTWVPVDFWSHNTFISIANHRGEVIQADL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G470400`
TK1151 ID	TkA06G470400
OH-1004 ID	LXL04_008036
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	32.500
Protein coverage (%)	TK1151 56.492 / OH-1004 43.269 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G470400`
Location	Chr06:116324293-116326208 (-)
Description	Similar to At3g55350: Protein ALP1-like
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_008036` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000118 histone deacetylase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0004518 nuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT3G55350 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.522

Rank 1 · TkA06G470400 · TK1151

Cytoplasm0.422

Rank 2 · TkA06G470400 · TK1151

Cell membrane0.082

Rank 3 · TkA06G470400 · TK1151

Endoplasmic reticulum0.035

Rank 4 · TkA06G470400 · TK1151

Mitochondrion0.025

Rank 5 · TkA06G470400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13600DUF414051-80 aa

PF24706DUF766951-90 aa

PF00076RRM_153-120 aa

PF13600DUF4140280-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G470400	`PF13600`	DUF4140	51	80	0.094	13.9
TkA06G470400	`PF24706`	DUF7669	51	90	0.16	12.9
TkA06G470400	`PF00076`	RRM_1	53	120	7.4e-06	26.5
TkA06G470400	`PF13600`	DUF4140	280	361	0.094	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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