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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G468870
Reference: TK1151 Chr: Chr06 Coordinates: 115959476-115965707 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3500 bp · TkA06G468870|TK1151|cDNA

AGGAGAGATGACGAAGAAACTGATGGAGCCCCCATGAACTTGCACCTGTAATTTCTTTAAAATTCAAGGCTCTGTGTGATTAGTATATATGCATGTATGCATCATAGTCAATGTATGTATACAGCTCGGAACAAGTAATCCCTTCTCATCAAACAATCATCGTCACTTTTCGACTTCCTTTTCGATAACATCGATTTCAGTAATTCAATAGTTCCTTGATTTCATTTTTTTTGGTCAAATTTCAACATCTTACATTCTAT...

CDS

Download CDS FASTA

2004 bp · TkA06G468870|TK1151|CDS

ATGGCTGTGATCAATTCTGTTTCGGGTGTGGATTCACAAAGAATCAACCAGATAAGGTATCCTGTTGTTGACACCTCTGAGATAACGATGAGTAGTCATGAAATCGTTGAAGAAACACCACCTCCTAGAGAAGTTGAAGAAGATAAACTTTATGTAGCTGTGGGGAAGGATTTGAAAGAGAGTCAGTCAACTCTACTGTGGGCATTACGCAATTCAAGAGGCAGACAGATATGCATCCTTCATGTTCATCAACCTGCAAA...

Protein

Download Protein FASTA

667 aa · TkA06G468870|TK1151|PROTEIN

MAVINSVSGVDSQRINQIRYPVVDTSEITMSSHEIVEETPPPREVEEDKLYVAVGKDLKESQSTLLWALRNSRGRQICILHVHQPANKIPIMGTKFRINQLETHQVAAYHEMEKQNMHKLLEKYKQICSNTGVNGEFHVVESDSIEKSIVEFIHDHNVRRLVMGAAADKHFSRKMVDLKSKKAIYVRLQASDTCHIQFICKGNLIFTRQERVVDGLNASLSSLSLQPNTNPDSGPSSLRSKSVTEGQITRLPLTSPHQDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G468870
TK1151 IDTkA06G468870
OH-1004 IDLXL04_022646
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 75.517
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G468870
LocationChr06:115959476-115965707 (+)
DescriptionSimilar to PUB33: U-box domain-containing protein 33
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g45910 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g49060 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g51270 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At4g25160 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At3g61390 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0163000 Functions as an E3 ubiquitin ligase.
MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022646 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT2G45910
ath:AT3G49060
ath:AT5G61560
dosa:Os06g0163000
osa:4340220
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.472
Rank 1 · TkA06G468870 · TK1151
Cell membrane0.355
Rank 2 · TkA06G468870 · TK1151
Nucleus0.279
Rank 3 · TkA06G468870 · TK1151
Golgi apparatus0.057
Rank 4 · TkA06G468870 · TK1151
Endoplasmic reticulum0.051
Rank 5 · TkA06G468870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00582Usp52-173 aa
PF05010TACC_C108-129 aa
PF00069Pkinase114-153 aa
PF08651DASH_Duo1115-134 aa
PF01636APH359-429 aa
PF19220Rod_CreS364-507 aa
PF05911FPP368-518 aa
PF12325TMF_TATA_bd383-451 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G468870PF00582Usp521730.01816.3
TkA06G468870PF05010TACC_C1081290.5210.7
TkA06G468870PF00069Pkinase1141531.5e-2177.7
TkA06G468870PF08651DASH_Duo11151340.4911.0
TkA06G468870PF01636APH3594290.1612.4
TkA06G468870PF19220Rod_CreS3645070.1511.9
TkA06G468870PF05911FPP3685180.002117.1
TkA06G468870PF12325TMF_TATA_bd3834510.9910.3
TkA06G468870PF05010TACC_C3845040.5210.7
TkA06G468870PF09340NuA43894153.28.4
TkA06G468870PF11932DUF34503924874.47.2
TkA06G468870PF00582Usp4044210.01816.3
TkA06G468870PF08651DASH_Duo14144490.4911.0
TkA06G468870PF07851TMEM120A-B4195073.37.6
TkA06G468870PF07889DUF16644194733.48.5
TkA06G468870PF00069Pkinase4334631.5e-2177.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUH1Arabidopsis thalianasp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 3340.800%Swiss-ProtMedium
Q94A51Arabidopsis thalianasp|Q94A51|PUB32_ARATH U-box domain-containing protein 3233.500%Swiss-ProtMedium
Q9LU47Arabidopsis thalianasp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 5349.700%Swiss-ProtLow
Q9SW11Arabidopsis thalianasp|Q9SW11|PUB35_ARATH U-box domain-containing protein 3547.900%Swiss-ProtLow
Q8GZ84Arabidopsis thalianasp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 3648.900%Swiss-ProtLow
Q5WA76Oryza sativa subsp. japonicasp|Q5WA76|PUB70_ORYSJ U-box domain-containing protein 7040.800%Swiss-ProtLow

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