TkA06G467280 | RubberDandelionOmics

Gene overview

TkA06G467280

Reference: TK1151 Chr: Chr06 Coordinates: 115566982-115576500 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1305 bp · TkA06G467280|TK1151|cDNA

TATAGATGTCCCTCTTGGTCCTCCACCTCCGCTCAGTCTCCAATTAAATGCTCATCGCCATTAATGCTCTTTTTCCCTCCTCTGCAACCTACACATTCAATATATTTACATACATATACATGTATGTATATTATATGTATGATTTGAAGGGACAACACAACTGACCCACACACACATACACGATAATATATGTCCTTTGGTTCTCAAATCCAGTCTTCGCCATTAATGCTTCCTCCCTTATCTTCTTTACTGCAAAATTT...

CDS

Download CDS FASTA

834 bp · TkA06G467280|TK1151|CDS

ATGGGGAGAGCGCCGTGCTGTGAGAAGACAGGATTGAAGAGAGGGCCATGGACGCAGGAAGAAGATGAGCTTTTGGTTGATTACATCAAAAAGAACGGCCATGGCAGCTGGCGGTCGCTACCCAAACTCGCCGGTTTACTCCGGTGTGGTAAGAGCTGCCGGCTCCGGTGGACCAACTACCTCCGGCCAGACATCAAACGTGGTCCATTTAGCCCTGAAGAAGAAAAACTCGTCATCCAACTACATGCCATTCTTGGCAA...

Protein

Download Protein FASTA

277 aa · TkA06G467280|TK1151|PROTEIN

MGRAPCCEKTGLKRGPWTQEEDELLVDYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFSPEEEKLVIQLHAILGNRWAAIAAQIPGRTDNEIKNLWNTHLRKRLLSIGIDPQTHEPTAISGPLKRPPASPSTRHMAQWESARLEAEARLSLESSLLLTPSTTNTKRTTANTNTDYFLKIWNSEVGNSFRTMNRVACSSPASQASVSGTTMETGQKPELESELKFYSGMTRSSSSDEVEDSSDTALQLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G467280`
TK1151 ID	TkA06G467280
OH-1004 ID	LXL04_026734
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G467280

Location Chr06:115566982-115576500 (-)

Description Similar to MYB17: Transcription factor MYB17

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g61250`	Transcription factor that may play a role in flower development by repressing ANT.	Characterization of Arabidopsis MYB transcription factor gene AtMYB17 and its possible regulation by LEAFY and AGL15.2009 · DOI: 10.1016/s1673-8527(08)60096-x LATE MERISTEM IDENTITY2 acts together with LEAFY to activate APETALA1.2011 · DOI: 10.1242/dev.063073
`At3g01140`	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation.	Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.2008 · DOI: 10.1104/pp.108.126979 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At5g15310`	Involved in the control of epidermal cell morphogenesis in petals.	Control of cell and petal morphogenesis by R2R3 MYB transcription factors.2007 · DOI: 10.1242/dev.02836 MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.2013 · DOI: 10.1105/tpc.113.110783 The MIXTA-like transcription factor MYB16 is a major regulator of cuticle formation in vegetative organs.2013 · DOI: 10.4161/psb.26826
`At4g21440`	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable).	Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene.2003 · DOI: 10.1104/pp.102.019273 The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae.2006 · DOI: 10.4161/psb.1.6.3512
`At1g34670`	Transcription factor that acts as a negative regulator of lateral root (LR) development.	AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis.2014 · DOI: 10.1111/nph.12879

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026734 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000902 cell morphogenesis Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0010091 trichome branching Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:1901332 negative regulation of lateral root development Biological Process

KEGG gene cross-reference

ath:AT1G34670

ath:AT3G01140

ath:AT3G61250

ath:AT4G21440

ath:AT5G15310

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.891

Rank 1 · TkA06G467280 · TK1151

Cytoplasm0.218

Rank 2 · TkA06G467280 · TK1151

Mitochondrion0.026

Rank 3 · TkA06G467280 · TK1151

Cell membrane0.018

Rank 4 · TkA06G467280 · TK1151

Endoplasmic reticulum0.009

Rank 5 · TkA06G467280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding14-61 aa

PF23082Myb_DNA-binding_216-36 aa

PF13921Myb_DNA-bind_617-76 aa

PF00249Myb_DNA-binding67-112 aa

PF13921Myb_DNA-bind_670-114 aa

PF23082Myb_DNA-binding_287-105 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G467280	`PF00249`	Myb_DNA-binding	14	61	1.2e-36	125.3
TkA06G467280	`PF23082`	Myb_DNA-binding_2	16	36	0.12	13.2
TkA06G467280	`PF13921`	Myb_DNA-bind_6	17	76	2.4e-20	73.2
TkA06G467280	`PF00249`	Myb_DNA-binding	67	112	1.2e-36	125.3
TkA06G467280	`PF13921`	Myb_DNA-bind_6	70	114	2.4e-20	73.2
TkA06G467280	`PF23082`	Myb_DNA-binding_2	87	105	0.12	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2D9`	Arabidopsis thaliana	sp\|Q9M2D9\|MYB17_ARATH Transcription factor MYB17	62.100%	Swiss-Prot	High
`Q9LE63`	Arabidopsis thaliana	sp\|Q9LE63\|MY106_ARATH Transcription factor MYB106	66.500%	Swiss-Prot	Medium
`Q9LXF1`	Arabidopsis thaliana	sp\|Q9LXF1\|MYB16_ARATH Transcription factor MYB16	67.300%	Swiss-Prot	Medium
`Q9LDR8`	Arabidopsis thaliana	sp\|Q9LDR8\|MY102_ARATH Transcription factor MYB102	75.000%	Swiss-Prot	Low
`Q9S9Z2`	Arabidopsis thaliana	sp\|Q9S9Z2\|MYB93_ARATH Transcription factor MYB93	71.900%	Swiss-Prot	Low

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