TkA06G466210 | RubberDandelionOmics

Gene overview

TkA06G466210

Reference: TK1151 Chr: Chr06 Coordinates: 115347569-115348951 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1192 bp · TkA06G466210|TK1151|cDNA

AGGAACTTATTCCAGAAAGAAGAACAAAAAAAAAAAAAAACGAAACAAGAACAAGAGAGAGAGAAAGAGTGATGAAGGACACATCCAGTAATAGTATCTTGGTACTGCCGGAAGACTGTCTGTCGGAGGTACTATCACTAACTTCACCTACGGACGCGTGCAGAGCTGCCGCCACCGCTAAAGGGTTCACTTCCGCGGCGGAGTCCGATGCCGTTTGGGAGCTGTTTCTGCCACCGGATTACCGTCAAGTAATTGCGAGG...

CDS

Download CDS FASTA

801 bp · TkA06G466210|TK1151|CDS

ATGAAGGACACATCCAGTAATAGTATCTTGGTACTGCCGGAAGACTGTCTGTCGGAGGTACTATCACTAACTTCACCTACGGACGCGTGCAGAGCTGCCGCCACCGCTAAAGGGTTCACTTCCGCGGCGGAGTCCGATGCCGTTTGGGAGCTGTTTCTGCCACCGGATTACCGTCAAGTAATTGCGAGGGCGGTTTCTCCGCTGGTTTTTGACTCCAAAAAGCAACTCTACCTCTTCTTATCTGACTCACATATCCTCCT...

Protein

Download Protein FASTA

266 aa · TkA06G466210|TK1151|PROTEIN

MKDTSSNSILVLPEDCLSEVLSLTSPTDACRAAATAKGFTSAAESDAVWELFLPPDYRQVIARAVSPLVFDSKKQLYLFLSDSHILLDHKYLSFHVDKESGKKCYMLGARKLSIAWQDDSRYWEWKHIPESRFPEVCILKDEWYWLGIHGKIEAIMLSPRSTYIAYLVFQTRGDSRGLGVPARTKVSFGGIESRTQNVYLQRPGANTTRQENSVFPRRRKDGWMEIKLGEFECNGIDNNGEIEMEFVEHRTWKNGLIVEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G466210`
TK1151 ID	TkA06G466210
OH-1004 ID	LXL04_022679
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.400
Protein coverage (%)	TK1151 96.992 / OH-1004 97.786 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G466210

Location Chr06:115347569-115348951 (+)

Description Similar to At2g02240: F-box protein At2g02240

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g02240`	F-box protein At2g02240.	No verified direct reference in this release
`At2g02250`	Putative F-box protein PP2-B2.	No verified direct reference in this release
`At5g24560`	Putative F-box protein PP2-B12.	No verified direct reference in this release
`At2g02340`	Putative F-box protein PP2-B8.	No verified direct reference in this release
`At2g02230`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022679 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G09155

ath:AT2G02230

ath:AT2G02240

ath:AT2G02250

ath:AT2G02360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.553

Rank 1 · TkA06G466210 · TK1151

Cytoplasm0.505

Rank 2 · TkA06G466210 · TK1151

Cell membrane0.081

Rank 3 · TkA06G466210 · TK1151

Endoplasmic reticulum0.073

Rank 4 · TkA06G466210 · TK1151

Extracellular0.032

Rank 5 · TkA06G466210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box9-50 aa

PF12937F-box-like10-49 aa

PF14299PP2102-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G466210	`PF00646`	F-box	9	50	0.00077	20.0
TkA06G466210	`PF12937`	F-box-like	10	49	6.7e-05	23.3
TkA06G466210	`PF14299`	PP2	102	265	9.2e-46	156.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q3E6P4`	Arabidopsis thaliana	sp\|Q3E6P4\|FB95_ARATH F-box protein At2g02240	43.100%	Swiss-Prot	Medium
`Q9ZVR5`	Arabidopsis thaliana	sp\|Q9ZVR5\|PP2B2_ARATH Putative F-box protein PP2-B2	40.900%	Swiss-Prot	Medium
`Q9FLU7`	Arabidopsis thaliana	sp\|Q9FLU7\|P2B12_ARATH Putative F-box protein PP2-B12	44.100%	Swiss-Prot	Medium
`Q9ZVQ8`	Arabidopsis thaliana	sp\|Q9ZVQ8\|PP2B8_ARATH Putative F-box protein PP2-B8	38.400%	Swiss-Prot	Medium
`Q6NPT8`	Arabidopsis thaliana	sp\|Q6NPT8\|PP2B1_ARATH F-box protein PP2-B1	37.400%	Swiss-Prot	Medium

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