Gene Card
Gene overview
cDNA / CDS / Protein Sequences
5593 bp · TkA06G460300|TK1151|cDNA
TCGTTTTGAGCATTTAGAGCTGTTGTTGGTTCTTTTACGTTCACTGCCATATGCACCAAAGATTTTTCAAACTCGAGCATTACAGGATCTTTTGATTTTGGCTTGCAGTCATTCGGAAAATAGAAGCAGTCTCACTAACATGGAGGAATGGCCCCAGTGGCTATTGGAACTTCTTATATCTAATTATGAGATGGGTACTACAAACGGTTCAATGTCATCAAGCATAAGAGATGTTGAAGACCTTGTACACAATTTCCTCA...
3324 bp · TkA06G460300|TK1151|CDS
ATGGCTACTTCGGGACAGAGGAGGGGGAAAAGTGATATGGAACGGGCTTTGAGATGGAATGTCTCTGAAGCAATGGGAACTGCATGGATTGAATGTTTGCAGTCGGTTGAAACAAAATCGGTTTATGGGAATAATTTTAATGCGTTGTCGTATAAATTTGTTGCATTGCTTGTTGGAAGTTTAGCTTTTGCCAGAAACATGCAACGATCCGAGGTTGATAGACGTGCTCGAGTTGATTTTGTTGCTCGACATCGTTCATC...
Protein
Download Protein FASTA1107 aa · TkA06G460300|TK1151|PROTEIN
MATSGQRRGKSDMERALRWNVSEAMGTAWIECLQSVETKSVYGNNFNALSYKFVALLVGSLAFARNMQRSEVDRRARVDFVARHRSSTGIRAWRKLIHYLIETESLFGLLSKKLCNPKRVFWKIDYMETPSRMHGCLRRDYKGSDHSNVASISKDTIQTNHDKDHKASILALESLPIELANEEDEQDTVVNIEGNTDGMWLYEDIHRRSSATAEQQLQVPMDSTEHQVINYQDFPQSPSAAGPGYIATEHYEIIILELPA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G460300 |
|---|---|
| TK1151 ID | TkA06G460300 |
| OH-1004 ID | LXL04_022710 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 39.455Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G460300 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:113905628-113920323 (-) | |||||||||
| Description | Similar to BCHC2: BEACH domain-containing protein C2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G45540 ath:AT3G60920 ddi:DDB_G0280971 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16057DUF480022-153 aaPF31242HGL2_5th28-53 aaPF06469DUF108890-164 aaPF14844PH_BEACH260-346 aaPF02239Cytochrom_D1339-364 aaPF02138Beach374-650 aaPF31242HGL2_5th433-470 aaPF24814WD40_Prp19761-859 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G460300 | PF16057 | DUF4800 | 22 | 153 | 0.012 | 15.5 |
| TkA06G460300 | PF31242 | HGL2_5th | 28 | 53 | 0.11 | 13.8 |
| TkA06G460300 | PF06469 | DUF1088 | 90 | 164 | 0.22 | 12.0 |
| TkA06G460300 | PF14844 | PH_BEACH | 260 | 346 | 1.3e-23 | 83.8 |
| TkA06G460300 | PF02239 | Cytochrom_D1 | 339 | 364 | 0.17 | 11.1 |
| TkA06G460300 | PF02138 | Beach | 374 | 650 | 2.9e-116 | 388.4 |
| TkA06G460300 | PF31242 | HGL2_5th | 433 | 470 | 0.11 | 13.8 |
| TkA06G460300 | PF24814 | WD40_Prp19 | 761 | 859 | 4.7e-11 | 43.0 |
| TkA06G460300 | PF25175 | Beta-prop_WDR5 | 769 | 933 | 3.6e-12 | 46.9 |
| TkA06G460300 | PF24807 | WD40_CDC20-Fz | 769 | 842 | 2.3e-11 | 44.2 |
| TkA06G460300 | PF25460 | Beta-prop_Aladin | 770 | 841 | 0.018 | 14.9 |
| TkA06G460300 | PF00400 | WD40 | 771 | 794 | 7.8e-15 | 55.4 |
| TkA06G460300 | PF20426 | NBCH_WD40 | 773 | 986 | 1.4e-20 | 74.2 |
| TkA06G460300 | PF25173 | Beta-prop_WDR3_1st | 773 | 839 | 1.8e-14 | 54.6 |
| TkA06G460300 | PF24817 | WD40_WDHD1_1st | 774 | 851 | 3.1e-10 | 40.4 |
| TkA06G460300 | PF25172 | Beta-prop_WDR3_2nd | 774 | 911 | 3.2e-08 | 33.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.