TkA06G458070 | RubberDandelionOmics

Gene overview

TkA06G458070

Reference: TK1151 Chr: Chr06 Coordinates: 113284111-113285382 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1242 bp · TkA06G458070|TK1151|cDNA

ATGAACCATTTACGCATCATAATCCTCACAATATGGGTCATCGCCACCGCCTCCGGCCACAACATCACCGACATACTGTCAGATTTCCCCGAATACAGCGTCTTCAACGACTACCTCACACAAACAAGACTCGCCGACGAGATCAACAGCCGCCAACCAATCACCGTTCTCGTGTTGGACAACACCGTCGTGACAAAATTCGTCGGCAATCAATCTCTTTCCGTCGTTAAACCTGCTTTAAGCATTCATGTTCTTTTGGA...

CDS

Download CDS FASTA

1242 bp · TkA06G458070|TK1151|CDS

ATGAACCATTTACGCATCATAATCCTCACAATATGGGTCATCGCCACCGCCTCCGGCCACAACATCACCGACATACTGTCAGATTTCCCCGAATACAGCGTCTTCAACGACTACCTCACACAAACAAGACTCGCCGACGAGATCAACAGCCGCCAACCAATCACCGTTCTCGTGTTGGACAACACCGTCGTGACAAAATTCGTCGGCAATCAATCTCTTTCCGTCGTTAAACCTGCTTTAAGCATTCATGTTCTTTTGGA...

Protein

Download Protein FASTA

413 aa · TkA06G458070|TK1151|PROTEIN

MNHLRIIILTIWVIATASGHNITDILSDFPEYSVFNDYLTQTRLADEINSRQPITVLVLDNTVVTKFVGNQSLSVVKPALSIHVLLDYFDMGKLLTIGGGRMTTTTLYQTTGTAAGSTGFVNITDLKGGKVEFGSAVPGSKNGSLLTKTVKQLPYNISVLEINAPIIALELIPVPSAVNFTNVLENARCRTFLKMLESTGVLNIYQRVAEKALTLFAPSDAAFNVTELPDFNTLTNAELVSLLMYHATPTYLPEATLSSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G458070`
TK1151 ID	TkA06G458070
OH-1004 ID	LXL04_022722
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G458070

Location Chr06:113284111-113285382 (-)

Description Similar to FLA10: Fasciclin-like arabinogalactan protein 10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g60900`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At2g45470`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At5g55730`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At4g12730`	May be a cell surface adhesion protein.	No verified direct reference in this release
`At2g20520`	May be a cell surface adhesion protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022722 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0048364 root development Biological Process

GO:0048367 shoot system development Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0098552 side of membrane Cellular Component

KEGG gene cross-reference

ath:AT2G45470

ath:AT3G12660

ath:AT3G60900

ath:AT4G12730

ath:AT5G55730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.363

Rank 1 · TkA06G458070 · TK1151

Extracellular0.331

Rank 2 · TkA06G458070 · TK1151

Endoplasmic reticulum0.136

Rank 3 · TkA06G458070 · TK1151

Cytoplasm0.110

Rank 4 · TkA06G458070 · TK1151

Lysosome / Vacuole0.053

Rank 5 · TkA06G458070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02469Fasciclin31-124 aa

PF02469Fasciclin188-318 aa

PF27998ArabinogalactanP257-265 aa

PF27998ArabinogalactanP323-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G458070	`PF02469`	Fasciclin	31	124	2.1e-21	77.1
TkA06G458070	`PF02469`	Fasciclin	188	318	2.1e-21	77.1
TkA06G458070	`PF27998`	ArabinogalactanP	257	265	0.0047	17.9
TkA06G458070	`PF27998`	ArabinogalactanP	323	406	0.0047	17.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZX4`	Arabidopsis thaliana	sp\|Q9LZX4\|FLA10_ARATH Fasciclin-like arabinogalactan protein 10	52.200%	Swiss-Prot	High
`O22126`	Arabidopsis thaliana	sp\|O22126\|FLA8_ARATH Fasciclin-like arabinogalactan protein 8	56.100%	Swiss-Prot	High
`Q9FM65`	Arabidopsis thaliana	sp\|Q9FM65\|FLA1_ARATH Fasciclin-like arabinogalactan protein 1	39.900%	Swiss-Prot	Medium
`Q9SU13`	Arabidopsis thaliana	sp\|Q9SU13\|FLA2_ARATH Fasciclin-like arabinogalactan protein 2	39.000%	Swiss-Prot	Medium
`Q9SIL7`	Arabidopsis thaliana	sp\|Q9SIL7\|FLA6_ARATH Fasciclin-like arabinogalactan protein 6	29.900%	Swiss-Prot	Low

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