Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2589 bp · TkA06G456290|TK1151|cDNA
AAATCTTTGATCAAGCATCCCAATCAGACAACAAACTTATATAAACAAGAATCACATTACTCTCTCACTTCCCGCAAACTTCTCTCTCTAAAAATACACATGGCTGCGTCTTCTTTCGCTCTCTCCCAAGCTGCCACCACCCTCTCTCGCGCCGCCGCTCTCCGCCATGACTCTTCCACTACCACCACCCAACAACCATCTTCCATATCGACCCTCTCGATCCCCTCTTTTTCCGGCCTTAAATCCACCTCAACTCCCTC...
2343 bp · TkA06G456290|TK1151|CDS
AAATCTTTGATCAAGCATCCCAATCAGACAACAAACTTATATAAACAAGAATCACATTACTCTCTCACTTCCCGCAAACTTCTCTCTCTAAAAATACACATGGCTGCGTCTTCTTTCGCTCTCTCCCAAGCTGCCACCACCCTCTCTCGCGCCGCCGCTCTCCGCCATGACTCTTCCACTACCACCACCCAACAACCATCTTCCATATCGACCCTCTCGATCCCCTCTTTTTCCGGCCTTAAATCCACCTCAACTCCCTC...
Protein
Download Protein FASTA780 aa · TkA06G456290|TK1151|PROTEIN
KSLIKHPNQTTNLYKQESHYSLTSRKLLSLKIHMAASSFALSQAATTLSRAAALRHDSSTTTTQQPSSISTLSIPSFSGLKSTSTPSSSAVAPRRASASRRRIISSAAVETLEKTDMSLVDKSVNTIRFLAVDAVEKANSGHPGLPMGCAPMGHILYDEVMKYNPKNPYWFNRDRFVLSAGHGCMLHYALLHLAGYDSVKEEDLKQFRQWGSKTPGHPENFETPGIEVTTGPLGQGIANAVGLAVAEKHLAARFNKPDAT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA06G456290 |
|---|---|
| TK1151 ID | TkA06G456290 |
| OH-1004 ID | LXL04_022745 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 99.744 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA06G456290 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:112785096-112789202 (+) | |||||||||
| Description | Similar to TKL-2: Transketolase-2, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006098 pentose-phosphate shunt Biological Process GO:0009051 pentose-phosphate shunt, oxidative branch Biological Process GO:0019253 reductive pentose-phosphate cycle Biological Process GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0009535 chloroplast thylakoid membrane Cellular Component GO:0009536 plastid Cellular Component GO:0009570 chloroplast stroma Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0003729 mRNA binding Molecular Function GO:0004802 transketolase activity Molecular Function GO:0005509 calcium ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G45290 ath:AT3G60750 sot:102591899 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF22613Transketolase_C_171-109 aaPF00456Transketolase_N122-453 aaPF13292DXP_synthase_N169-307 aaPF00676E1_dh227-362 aaPF13292DXP_synthase_N320-363 aaPF11740KfrA_N339-445 aaPF02779Transket_pyr471-641 aaPF09363XFP_C651-699 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA06G456290 | PF22613 | Transketolase_C_1 | 71 | 109 | 1.6e-41 | 141.8 |
| TkA06G456290 | PF00456 | Transketolase_N | 122 | 453 | 3e-152 | 507.1 |
| TkA06G456290 | PF13292 | DXP_synthase_N | 169 | 307 | 0.0011 | 19.1 |
| TkA06G456290 | PF00676 | E1_dh | 227 | 362 | 0.0012 | 18.6 |
| TkA06G456290 | PF13292 | DXP_synthase_N | 320 | 363 | 0.0011 | 19.1 |
| TkA06G456290 | PF11740 | KfrA_N | 339 | 445 | 0.18 | 13.2 |
| TkA06G456290 | PF02779 | Transket_pyr | 471 | 641 | 4.1e-53 | 180.3 |
| TkA06G456290 | PF09363 | XFP_C | 651 | 699 | 0.085 | 13.0 |
| TkA06G456290 | PF22613 | Transketolase_C_1 | 654 | 768 | 1.6e-41 | 141.8 |
| TkA06G456290 | PF02780 | Transketolase_C | 666 | 772 | 4.4e-11 | 43.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.