TkA06G442550 | RubberDandelionOmics

Gene overview

TkA06G442550

Reference: TK1151 Chr: Chr06 Coordinates: 109350887-109353386 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2141 bp · TkA06G442550|TK1151|cDNA

ATTTATCTATCTATATATATATATATTCAAATTTAATAGCCCAAAAGTTGAAAACTCCAATAGCCCAAAAATTTGAACGTTGATTATTGAGCCAATAGCCCACAATAGTTGAACGTGCATGTTTGACAAAGTGCTAAGTTGAAAATGGAGTCATCTATTGTTGAAAAATATTAGCCGCACAAAAATTGTCAAGACTCCTTTTTGACAAAATTGCTAGTCACCGATATAATAACACCCCACTTAAAACAAATTAAAATCGT...

CDS

Download CDS FASTA

1122 bp · TkA06G442550|TK1151|CDS

ATGTTTGAGAATTTGGAAATATCGGGGACATCGAAACCCTCGTCCGATCAACTCGACTGGTCGCTAAGTCTTAATGCTTTCGAACTGAATCTTATGCGTGAGTTTATTAGCGATGCTGACATCGGCACAGTACTACAACACCACCAATCAAAATCGCCAGAAAATTCAACACAATTTCTGGCCATATGTGAAACTCCTCCCATTGTTAGGGACGCCGTAGTCGTGTCACAAAACAGGGATTTTACGGCAGGGCAATGCAA...

Protein

Download Protein FASTA

373 aa · TkA06G442550|TK1151|PROTEIN

MFENLEISGTSKPSSDQLDWSLSLNAFELNLMREFISDADIGTVLQHHQSKSPENSTQFLAICETPPIVRDAVVVSQNRDFTAGQCNNVVSVGKDHRPPPLAKDAFPPSLPARRYKGVYRRPSGNFSVELNPGKRGNRLCLGTFNTAEEAAMAYDRAAFKDRGSDATLNFPDLLRTDNLTPEKDSNKKLSPWMECSPSSQSPELSIKNPHFQTHLPEPNISEIFPATCSQLKLVGTSENIGKEESALTAGAHAPSEWRKF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G442550`
TK1151 ID	TkA06G442550
OH-1004 ID	LXL04_022809
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G442550

Location Chr06:109350887-109353386 (+)

Description Similar to ERF2: Ethylene-responsive transcription factor 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44840`	Acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_022809 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

nsy:104217398

nta:107769743

nta:107825044

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.951

Rank 1 · TkA06G442550 · TK1151

Cytoplasm0.103

Rank 2 · TkA06G442550 · TK1151

Cell membrane0.025

Rank 3 · TkA06G442550 · TK1151

Plastid0.016

Rank 4 · TkA06G442550 · TK1151

Endoplasmic reticulum0.014

Rank 5 · TkA06G442550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP2114-162 aa

PF00847AP2259-308 aa

PF17567DUF5473307-368 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G442550	`PF00847`	AP2	114	162	2.5e-22	79.6
TkA06G442550	`PF00847`	AP2	259	308	2.5e-22	79.6
TkA06G442550	`PF17567`	DUF5473	307	368	0.086	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8L9K1`	Arabidopsis thaliana	sp\|Q8L9K1\|ERF99_ARATH Ethylene-responsive transcription factor 13	56.900%	Swiss-Prot	Low

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