TkA06G441110 | RubberDandelionOmics

Gene overview

TkA06G441110

Reference: TK1151 Chr: Chr06 Coordinates: 108990380-108996272 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3567 bp · TkA06G441110|TK1151|cDNA

TTTGGAATGAGAAAATTTAAAAATGTAAGCGGGAAAACAAGTATTTAAACAATCAAAGGATCTGCTTCCCATCCCATACTAATGAAGCAGCACACACAGGGGAGAGAGATGGCGGATGCATCCTCCAAGAAACCCATGAGTTTGAATCAGCTTCACAATCGCTTCCTCACCCCTTCTCATTCGAAAGCTTCTCCTTACGATCTCCTATCCGAAATGAAAAACCGGGAGAGGCAAGAGGAATACGATGCACCTTCCTTTAA...

CDS

Download CDS FASTA

3264 bp · TkA06G441110|TK1151|CDS

ATGAAGCAGCACACACAGGGGAGAGAGATGGCGGATGCATCCTCCAAGAAACCCATGAGTTTGAATCAGCTTCACAATCGCTTCCTCACCCCTTCTCATTCGAAAGCTTCTCCTTACGATCTCCTATCCGAAATGAAAAACCGGGAGAGGCAAGAGGAATACGATGCACCTTCCTTTAATATCACCGATTTCGATTCTCCTTCTGAAATGAAAAACCTGGAGCTGCAGGAGAAATACGATGATCCTTCATTTAATATCAC...

Protein

Download Protein FASTA

1087 aa · TkA06G441110|TK1151|PROTEIN

MKQHTQGREMADASSKKPMSLNQLHNRFLTPSHSKASPYDLLSEMKNRERQEEYDAPSFNITDFDSPSEMKNLELQEKYDDPSFNITDFDSTSGTRTKVVSDGKIVSVEALERADDIENSASHDEAGSTSSRSPSPEKITSSEDELPAADQRESSASIGGPVTSHMDNLTSEHVSVKRQKVKIKGRRRLCKVAVKDEEEEKEDENFQDVESDFTAAVSDFDSPIPVKTTENKRESGDEIRDILSDLSSRLEILSIEKGRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G441110`
TK1151 ID	TkA06G441110
OH-1004 ID	LXL04_022838
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G441110

Location Chr06:108990380-108996272 (-)

Description Similar to CHR24: Protein CHROMATIN REMODELING 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63950`	DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity).	A transient assay for recombination demonstrates that Arabidopsis SNM1 and XRCC3 enhance non-homologous recombination.2011 · DOI: 10.4238/vol10-3gmr1347

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0692750`	DNA helicase that acts as an essential component of the spindle assembly checkpoint (By similarity).	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development.2015 · DOI: 10.1111/tpj.12705

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022838 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0010965 regulation of mitotic sister chromatid separation Biological Process

GO:0016539 intein-mediated protein splicing Biological Process

GO:0045951 positive regulation of mitotic recombination Biological Process

GO:0051301 cell division Biological Process

GO:2000014 regulation of endosperm development Biological Process

GO:0000776 kinetochore Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G63950

bta:782916

dosa:Os04g0692750

dre:100005291

mmu:236930

osa:9266414

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.833

Rank 1 · TkA06G441110 · TK1151

Cytoplasm0.215

Rank 2 · TkA06G441110 · TK1151

Mitochondrion0.039

Rank 3 · TkA06G441110 · TK1151

Cell membrane0.027

Rank 4 · TkA06G441110 · TK1151

Endoplasmic reticulum0.017

Rank 5 · TkA06G441110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27248MJ1674_2nd235-283 aa

PF04851ResIII308-345 aa

PF04851ResIII381-547 aa

PF00176SNF2-rel_dom384-683 aa

PF13872AAA_34400-528 aa

PF11496HDA2-3735-868 aa

PF00271Helicase_C741-850 aa

PF15003HAUS2845-874 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G441110	`PF27248`	MJ1674_2nd	235	283	1.7	9.9
TkA06G441110	`PF04851`	ResIII	308	345	1.1e-08	35.9
TkA06G441110	`PF04851`	ResIII	381	547	1.1e-08	35.9
TkA06G441110	`PF00176`	SNF2-rel_dom	384	683	1.2e-58	199.2
TkA06G441110	`PF13872`	AAA_34	400	528	5.3e-05	23.0
TkA06G441110	`PF11496`	HDA2-3	735	868	0.0011	18.9
TkA06G441110	`PF00271`	Helicase_C	741	850	5.5e-24	85.2
TkA06G441110	`PF15003`	HAUS2	845	874	0.035	14.6
TkA06G441110	`PF27248`	MJ1674_2nd	1020	1082	1.7	9.9
TkA06G441110	`PF15003`	HAUS2	1021	1077	0.035	14.6
TkA06G441110	`PF00271`	Helicase_C	1044	1082	5.5e-24	85.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W103`	Arabidopsis thaliana	sp\|Q8W103\|CHR24_ARATH Protein CHROMATIN REMODELING 24	68.000%	Swiss-Prot	High
`A0A0P0WGX7`	Oryza sativa subsp. japonica	sp\|A0A0P0WGX7\|ENL1_ORYSJ SNF2 domain-containing protein ENL1	60.900%	Swiss-Prot	Medium

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