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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G430190
Reference: TK1151 Chr: Chr06 Coordinates: 106430388-106433349 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1898 bp · TkA06G430190|TK1151|cDNA

AAAAGGAAAAACGTTTACAACAAGAAACAAGGTTGACTTTTAAATTTCAGAGTTGCAAAAGATAATATACATTAAAAACAGATTTAGTAAAATATAAGTAGACAATACTACTCTTGTTTGGGACACAACTTACATTCTCATGGCACCTACTTCCCTCTACATGATCATTCTTGTTTGGTTGCTCCATGTCCTCCTGACCTCAGCAAAACCAACTGATTGGATAAACCATGGTGGAGATTTATACAACCGTAGACATGCCT...

CDS

Download CDS FASTA

1590 bp · TkA06G430190|TK1151|CDS

ATGGCACCTACTTCCCTCTACATGATCATTCTTGTTTGGTTGCTCCATGTCCTCCTGACCTCAGCAAAACCAACTGATTGGATAAACCATGGTGGAGATTTATACAACCGTAGACATGCCTATGGTGAAACAAAGATTAGTCCTGCAACTGTCGCTAATCTTCAACTTAAATGGAAGTTTGTGGCTGGAAATGATATAACAGCGACACCAACAATATACGACGACACTATCTATTTTCCAAGTTGGAATGGAAACATATA...

Protein

Download Protein FASTA

529 aa · TkA06G430190|TK1151|PROTEIN

MAPTSLYMIILVWLLHVLLTSAKPTDWINHGGDLYNRRHAYGETKISPATVANLQLKWKFVAGNDITATPTIYDDTIYFPSWNGNIYALNASDGSVIWQQDVGQLTGLNSTGLVPGVNRIVSRATPTIADDLLIVGIYGPAYVIGLNRSNGELVWSTQLSTHNASIITMSGTYHKRAFYVGTSSLEESTTLEACCNFIGSFSKLNAKNGSIIWQTYMLPDNNGSTNEYAGAALWGSSPSIDIHRNSVYIATGNMYSAPLN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G430190
TK1151 IDTkA06G430190
OH-1004 IDLXL04_022901
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G430190
LocationChr06:106430388-106433349 (+)
DescriptionSimilar to pvaA: Polyvinylalcohol dehydrogenase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022901 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0005509 calcium ion binding Molecular Function
GO:0009055 electron transfer activity Molecular Function
GO:0016491 oxidoreductase activity Molecular Function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Molecular Function
GO:0020037 heme binding Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0047059 polyvinyl alcohol dehydrogenase (cytochrome) activity Molecular Function
GO:0052934 alcohol dehydrogenase (cytochrome c) activity Molecular Function
GO:0070968 pyrroloquinoline quinone binding Molecular Function
KEGG gene cross-reference
ag:BAC15559
ag:BAD95543
ag:CAA57464
ppu:PP_2679
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.696
Rank 1 · TkA06G430190 · TK1151
Cytoplasm0.103
Rank 2 · TkA06G430190 · TK1151
Lysosome / Vacuole0.074
Rank 3 · TkA06G430190 · TK1151
Endoplasmic reticulum0.060
Rank 4 · TkA06G430190 · TK1151
Cell membrane0.048
Rank 5 · TkA06G430190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01011PQQ27-376 aa
PF13570Beta-prop_ACSF450-104 aa
PF13360PQQ_258-302 aa
PF07774EMC1_C77-104 aa
PF25293Beta-prop_EMC1_N83-102 aa
PF02368Big_290-117 aa
PF25293Beta-prop_EMC1_N91-181 aa
PF13570Beta-prop_ACSF4124-183 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G430190PF01011PQQ273764.5e-2175.9
TkA06G430190PF13570Beta-prop_ACSF4501048.1e-1968.9
TkA06G430190PF13360PQQ_2583021.1e-2797.9
TkA06G430190PF07774EMC1_C771041e-0835.7
TkA06G430190PF25293Beta-prop_EMC1_N831020.001219.0
TkA06G430190PF02368Big_2901170.009116.6
TkA06G430190PF25293Beta-prop_EMC1_N911810.001219.0
TkA06G430190PF13570Beta-prop_ACSF41241838.1e-1968.9
TkA06G430190PF07774EMC1_C1423011e-0835.7
TkA06G430190PF25293Beta-prop_EMC1_N2033140.001219.0
TkA06G430190PF13570Beta-prop_ACSF42863078.1e-1968.9
TkA06G430190PF13570Beta-prop_ACSF43383778.1e-1968.9
TkA06G430190PF13360PQQ_23513761.1e-2797.9
TkA06G430190PF07774EMC1_C3514391e-0835.7
TkA06G430190PF13360PQQ_24235021.1e-2797.9
TkA06G430190PF13570Beta-prop_ACSF44275028.1e-1968.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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