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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G427640
Reference: TK1151 Chr: Chr06 Coordinates: 105775630-105776124 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

495 bp · TkA06G427640|TK1151|cDNA

ATGGCTAACTTGGTAAGTCATTCAAAAACAGGGTTTTCAATATGCATCAAATACATATGTTTTCTTCTTTGTTTCATCCAAGACACGGTTTTATTTATATTTTGTTTTATCGGTATTGTTAAACCTGTTGAAATCCACCGTCACCACCATCCCCAAAAAAGACCACAAGGCCCTCCAATTTCGGCCATTTTGACACGAGAATTTCTTGTTACCATGAAATTCAAGGATATTATGCAAAATGATTCATCAGAATATTGTGC...

CDS

Download CDS FASTA

495 bp · TkA06G427640|TK1151|CDS

ATGGCTAACTTGGTAAGTCATTCAAAAACAGGGTTTTCAATATGCATCAAATACATATGTTTTCTTCTTTGTTTCATCCAAGACACGGTTTTATTTATATTTTGTTTTATCGGTATTGTTAAACCTGTTGAAATCCACCGTCACCACCATCCCCAAAAAAGACCACAAGGCCCTCCAATTTCGGCCATTTTGACACGAGAATTTCTTGTTACCATGAAATTCAAGGATATTATGCAAAATGATTCATCAGAATATTGTGC...

Protein

Download Protein FASTA

164 aa · TkA06G427640|TK1151|PROTEIN

MANLVSHSKTGFSICIKYICFLLCFIQDTVLFIFCFIGIVKPVEIHRHHHPQKRPQGPPISAILTREFLVTMKFKDIMQNDSSEYCAVCLDEFEGDDEMRCLPNCKHIFHQNCLDSWMDQIHDTCPLCRIPLLPLACEDEYKSRFRVAIGLNNFYGEDFTIMEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G427640
TK1151 IDTkA06G427640
OH-1004 IDLXL04_022621
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)63.600
Protein coverage (%)TK1151 98.780 / OH-1004 53.135
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G427640
LocationChr06:105775630-105776124 (-)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At5g05810 RING-H2 finger protein ATL43. No verified direct reference in this release
At5g06490 Putative RING-H2 finger protein ATL71. No verified direct reference in this release
At5g46650 RING-H2 finger protein ATL30. No verified direct reference in this release
At2g01150 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid (ABA) signaling and responses to salt and osmotic stresses during seed germination and early seedling development.
The Arabidopsis RING finger E3 ligase RHA2b acts additively with RHA2a in regulating abscisic acid signaling and drought response.2011 · DOI: 10.1104/pp.111.176214

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022621 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0047484 regulation of response to osmotic stress Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:1901371 regulation of leaf morphogenesis Biological Process
GO:1905421 regulation of plant organ morphogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G23980
ath:AT2G01150
ath:AT2G35420
ath:AT3G18930
ath:AT3G61460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.272
Rank 1 · TkA06G427640 · TK1151
Endoplasmic reticulum0.255
Rank 2 · TkA06G427640 · TK1151
Nucleus0.215
Rank 3 · TkA06G427640 · TK1151
Cell membrane0.199
Rank 4 · TkA06G427640 · TK1151
Lysosome / Vacuole0.194
Rank 5 · TkA06G427640 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21202SLX1_C7-24 aa
PF14835zf-RING_619-29 aa
PF13832zf-HC5HC2H_270-114 aa
PF08746zf-RING-like77-89 aa
PF12678zf-rbx179-129 aa
PF14446Prok-RING_180-114 aa
PF00130C1_180-115 aa
PF13920zf-C3HC4_383-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G427640PF21202SLX1_C7243.48.8
TkA06G427640PF14835zf-RING_619290.01116.3
TkA06G427640PF13832zf-HC5HC2H_2701140.01815.9
TkA06G427640PF08746zf-RING-like77890.1113.4
TkA06G427640PF12678zf-rbx1791294e-0730.9
TkA06G427640PF14446Prok-RING_1801140.01216.4
TkA06G427640PF00130C1_1801150.08113.5
TkA06G427640PF13920zf-C3HC4_3831310.001319.2
TkA06G427640PF17120zf-RING_16841260.0004120.6
TkA06G427640PF22191IBR_184942.88.6
TkA06G427640PF13923zf-C3HC4_2851283.6e-0730.6
TkA06G427640PF23413zf_RING_Vps8_fungal85910.05713.4
TkA06G427640PF22908PHD_NSD851240.1213.5
TkA06G427640PF26037zf-RING_DCST1_C851290.1512.8
TkA06G427640PF13639zf-RING_2861293.2e-1247.2
TkA06G427640PF17123zf-RING_11861141.6e-0938.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 141.700%Swiss-ProtMedium
Q5EAE9Arabidopsis thalianasp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL4344.100%Swiss-ProtLow
Q9FG21Arabidopsis thalianasp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL7141.100%Swiss-ProtLow
Q9FIR0Arabidopsis thalianasp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL3030.400%Swiss-ProtMedium
Q9ZU51Arabidopsis thalianasp|Q9ZU51|RHA2B_ARATH E3 ubiquitin-protein ligase RHA2B34.200%Swiss-ProtLow

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