TkA06G425740 | RubberDandelionOmics

Gene overview

TkA06G425740

Reference: TK1151 Chr: Chr06 Coordinates: 105308782-105313388 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2216 bp · TkA06G425740|TK1151|cDNA

GTTCATATCACAGCGCCACCATCACCTTCATCCTTGGCGTTTTCCGGCGCTGTCTTGGCCGAGCAGCATGAGCTCTTCATCAAAGAAACACCACCGCCGTCGTTCAGCCACTAGGTGATGTTTTCTTCCTCTTTGCGGCGCACCAGCAACCACGTCCAACCTCCCTCTCGGCCGGAATCCCTCACAACCTCCCTCTCGTGCGTCTAAGGTCATCGAGCGACCTCATCTTGGCACGTTTGTTGCTGCCGGAGAAGTACAAA...

CDS

Download CDS FASTA

1371 bp · TkA06G425740|TK1151|CDS

ATGATCATGAATTTCAATGACATTACAATGATATCCGACTTAAATCCAAATATGGAGGATTATACACTCAAGGTTAGAATTATCCGTATTTGGAAATTCACTTCATGGGGAAATCCAAACGATGTTCGTGGTTTTGGGATGGTATTAATTGATGAGAAGGGTGATAGGATTGAATGTAATGTTGATAGGCCTCATAACATAAAATGGGAAAAAGTTCTTGAGGAATATGGAGCTTTTTATATTCACAACCCAACACTTGG...

Protein

Download Protein FASTA

456 aa · TkA06G425740|TK1151|PROTEIN

MIMNFNDITMISDLNPNMEDYTLKVRIIRIWKFTSWGNPNDVRGFGMVLIDEKGDRIECNVDRPHNIKWEKVLEEYGAFYIHNPTLGVNQASIKYADGRNKLFFIYNTTVDKCKTFDGPIYSFKFVDFQTILDNGVQTDLTIVYFYSGLKVFVTLWGDNASEVVNYISTHADISCLIMIIQFGRLNFFGGRVYVNNTMAATKIFINKDIEEIREFKKELLSIKGYDTASSTRTIGSSILYSLRDEFIVRHPLYRISQIHE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G425740`
TK1151 ID	TkA06G425740
OH-1004 ID	LXL04_022937
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.400
Protein coverage (%)	TK1151 95.395 / OH-1004 26.962 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G425740`
Location	Chr06:105308782-105313388 (-)
Description	Similar to RPA1A: Replication protein A 70 kDa DNA-binding subunit A
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_022937` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0007004 telomere maintenance via telomerase Biological Process GO:0007140 male meiotic nuclear division Biological Process GO:0009555 pollen development Biological Process GO:0034502 protein localization to chromosome Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0005634 nucleus Cellular Component GO:0005662 DNA replication factor A complex Cellular Component GO:0003684 damaged DNA binding Molecular Function
KEGG gene cross-reference	ath:AT5G45400 dosa:Os02g0776800 dre:327491 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.944

Rank 1 · TkA06G425740 · TK1151

Cytoplasm0.121

Rank 2 · TkA06G425740 · TK1151

Cell membrane0.019

Rank 3 · TkA06G425740 · TK1151

Mitochondrion0.014

Rank 4 · TkA06G425740 · TK1151

Endoplasmic reticulum0.012

Rank 5 · TkA06G425740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02721DUF22312-133 aa

PF31228BRC-2_C184-204 aa

PF01782RimM206-244 aa

PF17207MCM_OB266-327 aa

PF08646Rep_fac-A_C271-409 aa

PF31228BRC-2_C320-377 aa

PF01782RimM338-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G425740	`PF02721`	DUF223	12	133	1.4e-14	55.0
TkA06G425740	`PF31228`	BRC-2_C	184	204	0.36	11.6
TkA06G425740	`PF01782`	RimM	206	244	0.056	14.4
TkA06G425740	`PF17207`	MCM_OB	266	327	0.21	12.1
TkA06G425740	`PF08646`	Rep_fac-A_C	271	409	8.7e-08	32.8
TkA06G425740	`PF31228`	BRC-2_C	320	377	0.36	11.6
TkA06G425740	`PF01782`	RimM	338	387	0.056	14.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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