TkA06G422190 | RubberDandelionOmics

Gene overview

TkA06G422190

Reference: TK1151 Chr: Chr06 Coordinates: 104449609-104450593 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

753 bp · TkA06G422190|TK1151|cDNA

ATGGATTTTGCTCCAAAACCCAAATCTACCATAGCCTTAGACCTCCATATCCTCTACCTCCACAATCCACGCCTTTTTACCGTCACTGATTTCATCTTCTCGCTCCTCAAAACCACCACCAGTACCTCCGGAACTGCATCACTCATTGACGCCACCACCCGCCGCTTCATTCCTCACTCCGACGTGCCACTTCTTGTACGTAACCTTGCAGTCTCACTCCGCCAACCGCCATTGTCACTCACAAATGGAGCGTGTGCTTT...

CDS

Download CDS FASTA

753 bp · TkA06G422190|TK1151|CDS

ATGGATTTTGCTCCAAAACCCAAATCTACCATAGCCTTAGACCTCCATATCCTCTACCTCCACAATCCACGCCTTTTTACCGTCACTGATTTCATCTTCTCGCTCCTCAAAACCACCACCAGTACCTCCGGAACTGCATCACTCATTGACGCCACCACCCGCCGCTTCATTCCTCACTCCGACGTGCCACTTCTTGTACGTAACCTTGCAGTCTCACTCCGCCAACCGCCATTGTCACTCACAAATGGAGCGTGTGCTTT...

Protein

Download Protein FASTA

250 aa · TkA06G422190|TK1151|PROTEIN

MDFAPKPKSTIALDLHILYLHNPRLFTVTDFIFSLLKTTTSTSGTASLIDATTRRFIPHSDVPLLVRNLAVSLRQPPLSLTNGACAFVIAPNSSYLPILYLSLFSLGCRFGRSPLNPASSTQEISRQLRLCKQVVAFATVESANKLLEVGFPNPVVVIDSNEFVSMMRAEPNGSESKIDVLQSDTAAILYSSGTTGKIKGVKLTHRNLISTNAGASFGRHPQLDLRRFPSFGKTLCGISKKYYSIDDAGV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G422190`
TK1151 ID	TkA06G422190
OH-1004 ID	LXL04_018249
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.800
Protein coverage (%)	TK1151 91.600 / OH-1004 97.009 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G422190

Location Chr06:104449609-104450593 (+)

Description Similar to 4CLL9: 4-coumarate--CoA ligase-like 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g63380`	Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.	A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid.2005 · DOI: 10.1074/jbc.m413578200
`At1g20480`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0901500`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release
`Os07g0280200`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release
`Os01g0901600`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018249 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006744 ubiquinone biosynthetic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009698 phenylpropanoid metabolic process Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004321 fatty-acyl-CoA synthase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G20510

ath:AT4G19010

ath:AT5G63380

dosa:Os01g0901500

dosa:Os07g0280200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.600

Rank 1 · TkA06G422190 · TK1151

Nucleus0.461

Rank 2 · TkA06G422190 · TK1151

Endoplasmic reticulum0.063

Rank 3 · TkA06G422190 · TK1151

Plastid0.057

Rank 4 · TkA06G422190 · TK1151

Mitochondrion0.043

Rank 5 · TkA06G422190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501AMP-binding59-216 aa

PF00513Late_protein_L2124-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G422190	`PF00501`	AMP-binding	59	216	5.1e-19	69.0
TkA06G422190	`PF00513`	Late_protein_L2	124	220	0.12	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84P23`	Arabidopsis thaliana	sp\|Q84P23\|4CLL9_ARATH 4-coumarate--CoA ligase-like 9	41.700%	Swiss-Prot	Medium
`Q84P25`	Arabidopsis thaliana	sp\|Q84P25\|4CLL2_ARATH 4-coumarate--CoA ligase-like 2	36.600%	Swiss-Prot	Medium
`Q7F1X5`	Oryza sativa subsp. japonica	sp\|Q7F1X5\|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5	40.400%	Swiss-Prot	Medium
`Q69RG7`	Oryza sativa subsp. japonica	sp\|Q69RG7\|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7	39.000%	Swiss-Prot	Medium
`Q8RU95`	Oryza sativa subsp. japonica	sp\|Q8RU95\|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6	37.300%	Swiss-Prot	Medium

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