TkA06G419110 | RubberDandelionOmics

Gene overview

TkA06G419110

Reference: TK1151 Chr: Chr06 Coordinates: 103729053-103733664 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1978 bp · TkA06G419110|TK1151|cDNA

AAATCAGCAACCTAGAGAGGATAGTTAAAAGAGGAGAAAAAAGAGAGGATGAATGATAAACACCAACGAAGGTTCCGTACAACGCTTCCGAAGAGCTTCATATACAGGAAAAATAACCCGTACTGGTCTACTCTAATTGCAGTCCTCCATGGATTACTCCAAATCAGTAATCCCTTCACACCTCCTCGGCGATCGTGGCTCTAATCTCGTTGTCATCAATCCAGGGTCTGGAAACGTACGAATTGGACTCGCTCATCAGG...

CDS

Download CDS FASTA

1806 bp · TkA06G419110|TK1151|CDS

ATGGATTACTCCAAATCAGTAATCCCTTCACACCTCCTCGGCGATCGTGGCTCTAATCTCGTTGTCATCAATCCAGGGTCTGGAAACGTACGAATTGGACTCGCTCATCAGGATGCCCCATTCAGTATCCCTCATTGCATTGCCCGCCGTACTACAGGAGCTAATCAATCACCCAGAAGAAATGTGCAAGATCAGATGCTTAATTCTCAAGTTACAACTGCTCAACATGCGGAGAGAGAGAAAGCCTACGACATTATAGC...

Protein

Download Protein FASTA

601 aa · TkA06G419110|TK1151|PROTEIN

MDYSKSVIPSHLLGDRGSNLVVINPGSGNVRIGLAHQDAPFSIPHCIARRTTGANQSPRRNVQDQMLNSQVTTAQHAEREKAYDIIASLLKIPFLDEEVVNNSYQRKTGRVDVLSQQNSKKESPLMWTDVVHKITNPPLPSEGSSEKPEVPEGGDGEKLESSECRYREFVCGEEAMRISPTEPYCLRRPIRRGHLNISQHYSMQQVLEDIETIWDWILIEKLHIPHSERNMYSALIVVPETFDDREIKEILSIVLRDLRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G419110`
TK1151 ID	TkA06G419110
OH-1004 ID	LXL04_022997
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 99.834 / OH-1004 99.667 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G419110

Location Chr06:103729053-103733664 (-)

Description Similar to ARP9: Actin-related protein 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43500`	Actin-related protein 9.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XQX0`	Actin-related protein 9.	No verified direct reference in this release
`Os04g0177600`	Actin-related protein 9.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022997 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000723 telomere maintenance Biological Process

GO:0006275 regulation of DNA replication Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0006338 chromatin remodeling Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0033044 regulation of chromosome organization Biological Process

GO:0034080 CENP-A containing chromatin assembly Biological Process

GO:0045739 positive regulation of DNA repair Biological Process

GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT5G43500

dosa:Os04g0177600

hsa:93973

osa:4335089

spo:2543563

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.558

Rank 1 · TkA06G419110 · TK1151

Cytoplasm0.449

Rank 2 · TkA06G419110 · TK1151

Lysosome / Vacuole0.053

Rank 3 · TkA06G419110 · TK1151

Cell membrane0.048

Rank 4 · TkA06G419110 · TK1151

Mitochondrion0.040

Rank 5 · TkA06G419110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00022Actin19-578 aa

PF17003Actin_micro206-301 aa

PF17003Actin_micro537-577 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G419110	`PF00022`	Actin	19	578	2.5e-30	106.1
TkA06G419110	`PF17003`	Actin_micro	206	301	0.0081	16.2
TkA06G419110	`PF17003`	Actin_micro	537	577	0.0081	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSW2`	Arabidopsis thaliana	sp\|Q9LSW2\|ARP9_ARATH Actin-related protein 9	58.300%	Swiss-Prot	High
`A2XQX0`	Oryza sativa subsp. indica	sp\|A2XQX0\|ARP9_ORYSI Actin-related protein 9	58.400%	Swiss-Prot	High
`Q0JF03`	Oryza sativa subsp. japonica	sp\|Q0JF03\|ARP9_ORYSJ Actin-related protein 9	58.400%	Swiss-Prot	High

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