TkA06G404440 | RubberDandelionOmics

Gene overview

TkA06G404440

Reference: TK1151 Chr: Chr06 Coordinates: 100162253-100166049 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3146 bp · TkA06G404440|TK1151|cDNA

TGATAATTGAAATCATTTTCTCTTTGCACTGCCTTTCATCTATATCTCTACTATATTCTCTGTTCTTCTCATAAACCATGGCTGAAATCGTTTTGTCTGCGTTGCTGACAATTGTATTGGAAAAGCTGGCTTCCGAAACCTTGAAGAAGATTGCTCGTTCAAAGAGAATTGGTTCCGAGCTCAAGAAACTGAAGAAGTCAGTAGATCAAATCCAAGCTCTACTTAATGATGCTTCTCAGCAGGAAGTAACTAATGAAGCT...

CDS

Download CDS FASTA

2259 bp · TkA06G404440|TK1151|CDS

ATGTCATTTGTTTGTGAGTTTTTCATGGGTGACAAAACGTTCGTACAATTCAAGGGGGCTAAAAATTTGAGAACATTCTTAGCATTGTATGTTGGGGTGATAGAAAGTTGGACAACATTTCACTTATCTAGTAAGGTCTTGAATGACTTGCTTCAGGAGTTACCATTGTTAAGGGTTCTGAGTTTGAGTCATCTTAGCATAAGCGAGGTACCAGAATCCGTTGGTAGTTTGAAGCACTTACGGTATCTTAATCTATCCAA...

Protein

Download Protein FASTA

752 aa · TkA06G404440|TK1151|PROTEIN

MSFVCEFFMGDKTFVQFKGAKNLRTFLALYVGVIESWTTFHLSSKVLNDLLQELPLLRVLSLSHLSISEVPESVGSLKHLRYLNLSNTGITHLAENVCNLYNLQTLIVSSCDKLSKLPESFSKLKNLQHFDIRDTPLLKNMPLGICELKSLRTLSKIIVGAEHVFPITGLKSLINLHGKLSIHGLGNVQNAMEAREANLAQKRLSELELDWGNEFFALRSKTREKEVLNELKPHSDTLKQLKLVSYGGIEFPNWVGDHSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G404440`
TK1151 ID	TkA06G404440
OH-1004 ID	LXL04_023081
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.700
Protein coverage (%)	TK1151 87.367 / OH-1004 53.328 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G404440

Location Chr06:100162253-100166049 (+)

Description Similar to RPPL1: Putative disease resistance RPP13-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g14460`	Potential disease resistance protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023081 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0042742 defense response to bacterium Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0004016 adenylate cyclase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0043531 ADP binding Molecular Function

KEGG gene cross-reference

ath:AT3G14460

ath:AT3G14470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.487

Rank 1 · TkA06G404440 · TK1151

Cytoplasm0.466

Rank 2 · TkA06G404440 · TK1151

Cell membrane0.198

Rank 3 · TkA06G404440 · TK1151

Endoplasmic reticulum0.076

Rank 4 · TkA06G404440 · TK1151

Plastid0.036

Rank 5 · TkA06G404440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598LRR_1436-373 aa

PF25013LRR_Zer-138-69 aa

PF23247LRR_RPS251-86 aa

PF13855LRR_851-89 aa

PF25019LRR_R13L1-DRL2152-87 aa

PF23286LRR_1354-139 aa

PF13855LRR_856-111 aa

PF23622LRR_At1g61320_AtMIF156-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G404440	`PF23598`	LRR_14	36	373	5.7e-36	124.7
TkA06G404440	`PF25013`	LRR_Zer-1	38	69	5.3e-11	43.5
TkA06G404440	`PF23247`	LRR_RPS2	51	86	1.6e-18	67.9
TkA06G404440	`PF13855`	LRR_8	51	89	7.3e-07	29.6
TkA06G404440	`PF25019`	LRR_R13L1-DRL21	52	87	1.3e-48	164.8
TkA06G404440	`PF23286`	LRR_13	54	139	1.7e-07	31.9
TkA06G404440	`PF13855`	LRR_8	56	111	7.3e-07	29.6
TkA06G404440	`PF23622`	LRR_At1g61320_AtMIF1	56	138	1.9	8.5
TkA06G404440	`PF12799`	LRR_4	57	91	2.3e-21	76.0
TkA06G404440	`PF00560`	LRR_1	57	77	3e-06	27.0
TkA06G404440	`PF01030`	Recep_L_domain	64	116	0.016	16.0
TkA06G404440	`PF25019`	LRR_R13L1-DRL21	74	133	1.3e-48	164.8
TkA06G404440	`PF25013`	LRR_Zer-1	76	134	5.3e-11	43.5
TkA06G404440	`PF00560`	LRR_1	79	100	3e-06	27.0
TkA06G404440	`PF13306`	LRR_5	79	135	0.44	11.2
TkA06G404440	`PF23952`	LRR_EndoS	81	154	3.6e-12	47.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LRR5`	Arabidopsis thaliana	sp\|Q9LRR5\|DRL21_ARATH Putative disease resistance protein At3g14460	35.500%	Swiss-Prot	Low

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