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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G398890
Reference: TK1151 Chr: Chr06 Coordinates: 98835683-98836681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

999 bp · TkA06G398890|TK1151|cDNA

ATGGGATTAAAACTACAAGTATTACCTCATGTGATAGATGAAAGTTTAATGAAAGTAGAAAGAAAGGAAATGCTTGTTATGTATAAAAGCGGGAAATTTGTTATTTCCAATAATACCCTTGGAAAGCTCATTGTTGGGTACAAAAGAGAGGGTCGGATTAGTGAATTATCGAATCTTTTATGGAGAATACAGGAAAACGAGTTGGTAGAAATGAAGAATATGATTTATGATGTTATTGATGCGTGTATTCATATAGGGTG...

CDS

Download CDS FASTA

999 bp · TkA06G398890|TK1151|CDS

ATGGGATTAAAACTACAAGTATTACCTCATGTGATAGATGAAAGTTTAATGAAAGTAGAAAGAAAGGAAATGCTTGTTATGTATAAAAGCGGGAAATTTGTTATTTCCAATAATACCCTTGGAAAGCTCATTGTTGGGTACAAAAGAGAGGGTCGGATTAGTGAATTATCGAATCTTTTATGGAGAATACAGGAAAACGAGTTGGTAGAAATGAAGAATATGATTTATGATGTTATTGATGCGTGTATTCATATAGGGTG...

Protein

Download Protein FASTA

332 aa · TkA06G398890|TK1151|PROTEIN

MGLKLQVLPHVIDESLMKVERKEMLVMYKSGKFVISNNTLGKLIVGYKREGRISELSNLLWRIQENELVEMKNMIYDVIDACIHIGWLETAHDILDDIEKEGNVLCSNSYASLLRAYNENKKHREAEGLLKQIKKTGIILSDKIKLHDFETRNGKKSDLAKCLIQEMREGEKGKDYLIYEFNSSIYFFMKAKMIEDALKTYKSMQEKKVDPTMTTYMYMVKGYSCLEMYREITILWGDIKRRCDDGNVVIDGDLYEVLIL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G398890
TK1151 IDTkA06G398890
OH-1004 IDLXL04_023116
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)97.600
Protein coverage (%)TK1151 100.000 / OH-1004 51.077
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G398890
LocationChr06:98835683-98836681 (+)
DescriptionSimilar to At4g17616: Pentatricopeptide repeat-containing protein At4g17616
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17616 Pentatricopeptide repeat-containing protein At4g17616. No verified direct reference in this release
At1g03100 Pentatricopeptide repeat-containing protein At1g03100, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023116 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0000166 nucleotide binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G03100
ath:AT1G68980
ath:AT1G69290
ath:AT3G09650
ath:AT4G17616
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.838
Rank 1 · TkA06G398890 · TK1151
Plastid0.072
Rank 2 · TkA06G398890 · TK1151
Nucleus0.069
Rank 3 · TkA06G398890 · TK1151
Cytoplasm0.048
Rank 4 · TkA06G398890 · TK1151
Cell membrane0.014
Rank 5 · TkA06G398890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_243-55 aa
PF01535PPR43-66 aa
PF26713TPR_RPO41_N74-110 aa
PF23276TPR_2475-204 aa
PF13041PPR_278-114 aa
PF01535PPR78-102 aa
PF29070MSC6_N87-132 aa
PF13812PPR_394-138 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G398890PF13041PPR_243555.8e-1659.0
TkA06G398890PF01535PPR43661.7e-1247.4
TkA06G398890PF26713TPR_RPO41_N741100.08513.1
TkA06G398890PF23276TPR_24752044e-0834.0
TkA06G398890PF13041PPR_2781145.8e-1659.0
TkA06G398890PF01535PPR781021.7e-1247.4
TkA06G398890PF29070MSC6_N871321.1e-0525.5
TkA06G398890PF13812PPR_3941382.6e-1453.8
TkA06G398890PF25639DUF79431031280.04114.5
TkA06G398890PF10366Vps39_11071810.09813.7
TkA06G398890PF13041PPR_21091385.8e-1659.0
TkA06G398890PF01535PPR1091381.7e-1247.4
TkA06G398890PF21292EME1-MUS81_C1091340.1812.7
TkA06G398890PF13041PPR_21561695.8e-1659.0
TkA06G398890PF01535PPR1561691.7e-1247.4
TkA06G398890PF25639DUF79431692580.04114.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B3H672Arabidopsis thalianasp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g1761645.100%Swiss-ProtMedium
Q9SA60Arabidopsis thalianasp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial27.300%Swiss-ProtLow

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