RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G386730
Reference: TK1151 Chr: Chr06 Coordinates: 95678864-95685517 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2765 bp · TkA06G386730|TK1151|cDNA

TTTGAAGTTCGTTTCCGCTTATCGCCCCGCTTAACCTCCTGTACGACTACGTCATCGATCGACACCCCAAATCGGAAAATTTTGTCAAACAACAAAAGCCCTAATCGTCAAAACTCACTCCCTCCCAAAAATCCCAAGTCAGCGTAACCTTCGATCCTTGTCAGAAACGCTTCCATTCTGGCATGAGATCTCGTTAACGCACCATTTGCAGTTGTTTCTGTTCATTTGTTTCTGTTCATCAATTTGGGTTTAGTTTCTGG...

CDS

Download CDS FASTA

2073 bp · TkA06G386730|TK1151|CDS

ATGTCAGAGGACGTGCTTCTACACCTGGCCTCAAACTCCTCTAATCAATCCGATCAATCTCTGCCATCAAAAATTGCAAAACTCGAAGCCAGAATGGTGGGTAAAACCTCCACTGCGGTGGTGTCTACTCTTCAGCTTCCATCTGCCCAAGCCACAGCAACCCGGTCCTCCATTTCTGCTTCTTCAGCTTCCAAGTTTGGAGCTAATGCTGCTGGTGAGATTTGTGCTGAATCCTTCGACTCTAGCGATTCGGAAGAGGA...

Protein

Download Protein FASTA

690 aa · TkA06G386730|TK1151|PROTEIN

MSEDVLLHLASNSSNQSDQSLPSKIAKLEARMVGKTSTAVVSTLQLPSAQATATRSSISASSASKFGANAAGEICAESFDSSDSEEDDSNGREFLIQANFQKRRKLVDDADSNSAEQNKVAVDVRQENVETLEPKSGTNVNKRKQSRGKSNSTPARGRGSSNDQTRTQNSTSTPPSLNGLFENSHQKQNSRPKEQLAQNERALLEEEVTSLRAKITTLEEDLKKARQEASEYQHMCQQLEKELKEVKSNEQQVKPKRMKV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G386730
TK1151 IDTkA06G386730
OH-1004 IDLXL04_023227
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G386730
LocationChr06:95678864-95685517 (-)
DescriptionSimilar to TOUSLED: Serine/threonine-protein kinase TOUSLED
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g20930 Required for correct initiation of floral organ primordia and for proper development of organ primordia.
TOUSLED kinase activity oscillates during the cell cycle and interacts with chromatin regulators.2004 · DOI: 10.1104/pp.103.038117
The Tousled gene in A. thaliana encodes a protein kinase homolog that is required for leaf and flower development.1993 · DOI: 10.1016/0092-8674(93)90537-z

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023227 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006325 chromatin organization Biological Process
GO:0006468 protein phosphorylation Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0018105 peptidyl-serine phosphorylation Biological Process
GO:0030154 cell differentiation Biological Process
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0051647 nucleus localization Biological Process
GO:0060147 regulation of post-transcriptional gene silencing Biological Process
KEGG gene cross-reference
ath:AT5G20930
dre:407732
hsa:9874
mmu:24086
xtr:780168
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.782
Rank 1 · TkA06G386730 · TK1151
Cytoplasm0.317
Rank 2 · TkA06G386730 · TK1151
Cell membrane0.034
Rank 3 · TkA06G386730 · TK1151
Mitochondrion0.024
Rank 4 · TkA06G386730 · TK1151
Golgi apparatus0.017
Rank 5 · TkA06G386730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26666DUF822124-33 aa
PF07303Occludin_ELL97-127 aa
PF01166TSC22182-200 aa
PF28016Mua196-275 aa
PF10046BLOC1_2196-259 aa
PF02996Prefoldin202-241 aa
PF01636APH203-236 aa
PF07303Occludin_ELL204-257 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G386730PF26666DUF822124330.02315.5
TkA06G386730PF07303Occludin_ELL971270.005518.2
TkA06G386730PF01166TSC221822000.03714.9
TkA06G386730PF28016Mua1962750.02715.4
TkA06G386730PF10046BLOC1_21962591.79.8
TkA06G386730PF02996Prefoldin2022413.08.5
TkA06G386730PF01636APH2032360.04814.1
TkA06G386730PF07303Occludin_ELL2042570.005518.2
TkA06G386730PF28907ZapB_rel2042398.27.8
TkA06G386730PF01166TSC222052370.03714.9
TkA06G386730PF26666DUF82212072540.02315.5
TkA06G386730PF26585STX17_N2102590.008116.9
TkA06G386730PF28907ZapB_rel2102398.27.8
TkA06G386730PF13012MitMem_reg2132770.1912.4
TkA06G386730PF05377FlaC_arch2142490.3112.2
TkA06G386730PF00069Pkinase2272763.3e-58197.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39238Arabidopsis thalianasp|Q39238|TSL_ARATH Serine/threonine-protein kinase TOUSLED63.400%Swiss-ProtHigh

JBrowse

View in Genome Browser