TkA06G382080 | RubberDandelionOmics

Gene overview

TkA06G382080

Reference: TK1151 Chr: Chr06 Coordinates: 94577051-94579076 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

552 bp · TkA06G382080|TK1151|cDNA

CTGCGTCCGACTGACGACCGACTAGAGACCGCCGCTTCTCTCACAGGCGCAACCACCGGCAAGTTCGATTTCAGACTAGAGACCGCTGCTACTCGATTTCAGATTACTCAAGTGTATGGATTTTATGATGAATGCCTTCGGAAGTATGGAAATGCTAATGTTTGGAAAACATTCACGGATCTTTTCGATTATTTCCCACTGACTGCATTGATCCCAGAACTGTATGGCCAGTCAAATTCTCCTCAGTTGGAATGCATTGC...

CDS

Download CDS FASTA

552 bp · TkA06G382080|TK1151|CDS

CTGCGTCCGACTGACGACCGACTAGAGACCGCCGCTTCTCTCACAGGCGCAACCACCGGCAAGTTCGATTTCAGACTAGAGACCGCTGCTACTCGATTTCAGATTACTCAAGTGTATGGATTTTATGATGAATGCCTTCGGAAGTATGGAAATGCTAATGTTTGGAAAACATTCACGGATCTTTTCGATTATTTCCCACTGACTGCATTGATCCCAGAACTGTATGGCCAGTCAAATTCTCCTCAGTTGGAATGCATTGC...

Protein

Download Protein FASTA

183 aa · TkA06G382080|TK1151|PROTEIN

LRPTDDRLETAASLTGATTGKFDFRLETAATRFQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALIPELYGQSNSPQLECIASLDSHSSKIKCVLWWPSGRHDKLISIDEQNIFLWSLDSSTSKSSIQFWDLRIMKKTNSIECSHVRNIDYDSKKKHMLVSLLCQFLQHMLPENLLWQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G382080`
TK1151 ID	TkA06G382080
OH-1004 ID	LXL04_015184
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	71.300
Protein coverage (%)	TK1151 52.459 / OH-1004 37.283 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G382080

Location Chr06:94577051-94579076 (+)

Description Similar to DWA2: WD repeat-containing protein DWA2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76260`	Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin- protein ligase complex that acts as a negative regulator in abscisic acid (ABA) signaling.	DWA1 and DWA2, two Arabidopsis DWD protein components of CUL4-based E3 ligases, act together as negative regulators in ABA signal transduction.2010 · DOI: 10.1105/tpc.109.073783

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XN40`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release
`Os03g0805300`	Serine/threonine-protein phosphatase PP2A-2 catalytic subunit.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015184 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0032456 endocytic recycling Biological Process

GO:0051049 regulation of transport Biological Process

GO:1905281 positive regulation of retrograde transport, endosome to Golgi Biological Process

GO:2001137 positive regulation of endocytic recycling Biological Process

GO:0000938 GARP complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G76260

gja:107122311

rno:362721

xtr:496745

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.497

Rank 1 · TkA06G382080 · TK1151

Cytoplasm0.407

Rank 2 · TkA06G382080 · TK1151

Mitochondrion0.083

Rank 3 · TkA06G382080 · TK1151

Endoplasmic reticulum0.058

Rank 4 · TkA06G382080 · TK1151

Cell membrane0.051

Rank 5 · TkA06G382080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00149Metallophos41-110 aa

PF23609Beta-prop_EIPR176-127 aa

PF24797Beta-prop_WDR35_TULP_N76-125 aa

PF24105Beta-prop_CAF1B_HIR177-130 aa

PF23381Beta-prop_IFT122_1st82-129 aa

PF24814WD40_Prp1984-124 aa

PF00400WD4084-121 aa

PF25174Beta-prop_THOC387-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G382080	`PF00149`	Metallophos	41	110	0.0012	20.1
TkA06G382080	`PF23609`	Beta-prop_EIPR1	76	127	3.7e-19	70.0
TkA06G382080	`PF24797`	Beta-prop_WDR35_TULP_N	76	125	0.066	13.1
TkA06G382080	`PF24105`	Beta-prop_CAF1B_HIR1	77	130	0.013	15.2
TkA06G382080	`PF23381`	Beta-prop_IFT122_1st	82	129	0.025	14.7
TkA06G382080	`PF24814`	WD40_Prp19	84	124	0.0007	19.5
TkA06G382080	`PF00400`	WD40	84	121	1.0	10.8
TkA06G382080	`PF25174`	Beta-prop_THOC3	87	148	0.02	14.7
TkA06G382080	`PF23646`	IgD2_Trs65	111	157	0.072	14.1
TkA06G382080	`PF24814`	WD40_Prp19	123	161	0.0007	19.5
TkA06G382080	`PF23609`	Beta-prop_EIPR1	128	166	3.7e-19	70.0
TkA06G382080	`PF00400`	WD40	150	163	1.0	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NPN9`	Arabidopsis thaliana	sp\|Q6NPN9\|DWA2_ARATH WD repeat-containing protein DWA2	54.300%	Swiss-Prot	Medium
`A2XN40`	Oryza sativa subsp. indica	sp\|A2XN40\|PP2A2_ORYSI Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	70.000%	Swiss-Prot	Low
`Q10BT5`	Oryza sativa subsp. japonica	sp\|Q10BT5\|PP2A2_ORYSJ Serine/threonine-protein phosphatase PP2A-2 catalytic subunit	70.000%	Swiss-Prot	Low

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