TkA06G374880 | RubberDandelionOmics

Gene overview

TkA06G374880

Reference: TK1151 Chr: Chr06 Coordinates: 92807816-92810263 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1307 bp · TkA06G374880|TK1151|cDNA

ATTCCGAGAGACGATTCCGAGATGCGGCGGTGGTGGACGATGGAGACGTGGTGTTGGAGCAGAGATTGAAGGATGTAGAGGCGGAGATGCAGCGAGAACCGGGACGTCATCTTCACTCGAAGTCGAACAGAGGAAGCAGCGGATCGGCGTAGCTCGTAGCGGCAGAAGGACGGAAGGGACGACGCAGATGCAGGAGGACGGAAGCTACACGAATCACCTGCCATCATCGCCCTCGTCGATAGCTCCACCGATTCCCCTTT...

CDS

Download CDS FASTA

762 bp · TkA06G374880|TK1151|CDS

ATGCCTGGTCGCATGGGAGGGAAGCAAAGAACAGTTAAAAATGTGTGGGTGTATAAGATAGATCCTGCAAGGAACTTAATGTGGGTCAGAGGACAAGTACCAGGGAATGAGGGGAATTTTGTATTTATAAAAGACGCATGGTACAAGAAACCAGATGTATCAATGCTTCCATTTCCTACTTATTTTTCAACAGAAGATGAGGATGTGACATGTTTGGAACCTCTGGTTCCGTATACACAGGTGTCGATTTTTGTAAGAGA...

Protein

Download Protein FASTA

253 aa · TkA06G374880|TK1151|PROTEIN

MPGRMGGKQRTVKNVWVYKIDPARNLMWVRGQVPGNEGNFVFIKDAWYKKPDVSMLPFPTYFSTEDEDVTCLEPLVPYTQVSIFVRDYLVFQLLEVVRVWRSIAVAVCTEYGPKKEKQIRKPKPPLSRVRFFLEKEMFRNKVNSRGFVAAKSKVGSTEMDAKWDLLWLFLLVLMDWVTSGDCKQDLNWQLGLNGQYWELRINCIKIGGILVISGIIWEHGSYGKFRSWSDYIGFMVKGILIFLCYSFGFDGIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G374880`
TK1151 ID	TkA06G374880
OH-1004 ID	LXL04_022668
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	94.300
Protein coverage (%)	TK1151 100.000 / OH-1004 91.319 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G374880

Location Chr06:92807816-92810263 (-)

Description Similar to RPL3B: 50S ribosomal protein L3-2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17465`	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022668 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005762 mitochondrial large ribosomal subunit Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0019843 rRNA binding Molecular Function

KEGG gene cross-reference

ate:Athe_1745

ath:AT3G17465

csc:Csac_2287

dau:Daud_0225

sat:SYN_00985

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.321

Rank 1 · TkA06G374880 · TK1151

Nucleus0.255

Rank 2 · TkA06G374880 · TK1151

Mitochondrion0.192

Rank 3 · TkA06G374880 · TK1151

Plastid0.155

Rank 4 · TkA06G374880 · TK1151

Endoplasmic reticulum0.081

Rank 5 · TkA06G374880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LRN8`	Arabidopsis thaliana	sp\|Q9LRN8\|RK3B_ARATH Large ribosomal subunit protein uL3m	82.900%	Swiss-Prot	Low

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