TkA06G347830 | RubberDandelionOmics

Gene overview

TkA06G347830

Reference: TK1151 Chr: Chr06 Coordinates: 86406873-86408546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1494 bp · TkA06G347830|TK1151|cDNA

ATGTGGTCAGTTGTACCTGAAGATGCGCTACAGAAGAAGAAAGTGAAGAAAGATAACAAAGGAGCTCTACCTCCTTTGGTAGTTCGGGAGATCCCAGCAGATGTTCAGGAACGAATCGAATCAATCGCTACGAAGAAACCCCAGGCAAAGCGAAAGAAGGGTGAAGCGATTGAAACCGAACAAGTCCAAACCGAACATGAACAAACTCCTCCCCGGAAGAAAAAGAAACCAAAGAAACAAGCTCAAAAGCCACCCACGAA...

CDS

Download CDS FASTA

1494 bp · TkA06G347830|TK1151|CDS

ATGTGGTCAGTTGTACCTGAAGATGCGCTACAGAAGAAGAAAGTGAAGAAAGATAACAAAGGAGCTCTACCTCCTTTGGTAGTTCGGGAGATCCCAGCAGATGTTCAGGAACGAATCGAATCAATCGCTACGAAGAAACCCCAGGCAAAGCGAAAGAAGGGTGAAGCGATTGAAACCGAACAAGTCCAAACCGAACATGAACAAACTCCTCCCCGGAAGAAAAAGAAACCAAAGAAACAAGCTCAAAAGCCACCCACGAA...

Protein

Download Protein FASTA

497 aa · TkA06G347830|TK1151|PROTEIN

MWSVVPEDALQKKKVKKDNKGALPPLVVREIPADVQERIESIATKKPQAKRKKGEAIETEQVQTEHEQTPPRKKKKPKKQAQKPPTKKPKKTPVLQDESSDDEATQSDASHHSEAQPEQQTPPRQIEAGTSKTPPEQPEKDTTFDNLENITKLTQTPPVPPEQLEQTNKPSPHQSDSEHVDEEIEMEGQGDDLFNPNQATTSTYIPPAEKFTFFPVTFEEEPLTSEQEDLFATKKDIHSLKTLMNAIIADFTSKVSDVEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G347830`
TK1151 ID	TkA06G347830
OH-1004 ID	LXL04_005545
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	67.900
Protein coverage (%)	TK1151 97.988 / OH-1004 44.885 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G347830`
Location	Chr06:86406873-86408546 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005545` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.883

Rank 1 · TkA06G347830 · TK1151

Cytoplasm0.232

Rank 2 · TkA06G347830 · TK1151

Mitochondrion0.023

Rank 3 · TkA06G347830 · TK1151

Cell membrane0.022

Rank 4 · TkA06G347830 · TK1151

Extracellular0.017

Rank 5 · TkA06G347830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09304Cortex-I_coil226-266 aa

PF05531NPV_P10246-294 aa

PF10078DUF2316266-308 aa

PF09304Cortex-I_coil274-340 aa

PF05531NPV_P10312-340 aa

PF10078DUF2316313-338 aa

PF09304Cortex-I_coil438-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G347830	`PF09304`	Cortex-I_coil	226	266	2.9	8.9
TkA06G347830	`PF05531`	NPV_P10	246	294	0.35	12.1
TkA06G347830	`PF10078`	DUF2316	266	308	0.44	11.6
TkA06G347830	`PF09304`	Cortex-I_coil	274	340	2.9	8.9
TkA06G347830	`PF05531`	NPV_P10	312	340	0.35	12.1
TkA06G347830	`PF10078`	DUF2316	313	338	0.44	11.6
TkA06G347830	`PF09304`	Cortex-I_coil	438	452	2.9	8.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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