TkA06G337670 | RubberDandelionOmics

Gene overview

TkA06G337670

Reference: TK1151 Chr: Chr06 Coordinates: 83997697-84000681 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1011 bp · TkA06G337670|TK1151|cDNA

ATGGTTTTTAGAGCGAAGCTAACTCCTTTGTTGCACAAGCCAGTTGCAGACCAAAAGTTATACAGAAGCAGTATTGGCTCATTACTATATCTAACTGGGGAGATTTTAGAAAGCAAAACTGTCGAAGACACTAAAACTGATGCTGGTGGGGACACCGAGATTGATGGAGATGAAGCTTATGACATGGACGTATCGTTTCTCAACATTGTACCTGCTCAGGCCATATCATACGCTGAGGGGGGCCTGTTAAAGGAGTTCAC...

CDS

Download CDS FASTA

1011 bp · TkA06G337670|TK1151|CDS

ATGGTTTTTAGAGCGAAGCTAACTCCTTTGTTGCACAAGCCAGTTGCAGACCAAAAGTTATACAGAAGCAGTATTGGCTCATTACTATATCTAACTGGGGAGATTTTAGAAAGCAAAACTGTCGAAGACACTAAAACTGATGCTGGTGGGGACACCGAGATTGATGGAGATGAAGCTTATGACATGGACGTATCGTTTCTCAACATTGTACCTGCTCAGGCCATATCATACGCTGAGGGGGGCCTGTTAAAGGAGTTCAC...

Protein

Download Protein FASTA

336 aa · TkA06G337670|TK1151|PROTEIN

MVFRAKLTPLLHKPVADQKLYRSSIGSLLYLTGEILESKTVEDTKTDAGGDTEIDGDEAYDMDVSFLNIVPAQAISYAEGGLLKEFTVYESTEFALSQKSQLEMYLDEPRSEITEDINVLSFWKAHQYRYPKLASMARDILSIPVSTVVSESAFSNGGRVLDKYRSSLSHKNVEALICTKDWLFGITGDEELCLQDVTEDIMELDSKGNSTHEVMEQQGNETTEPTTLDGSYYKARVSKQKGKQASELKLSLEQLIKKVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G337670`
TK1151 ID	TkA06G337670
OH-1004 ID	LXL04_007129
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.200
Protein coverage (%)	TK1151 40.774 / OH-1004 14.544 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G337670`
Location	Chr06:83997697-84000681 (+)
Description	Similar to Os03g0733400: Zinc finger BED domain-containing protein RICESLEEPER 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007129` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0032196 transposition Biological Process GO:0005634 nucleus Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference	dosa:Os03g0733400 dosa:Os05g0239150 dosa:Os05g0583200 osa:4339741 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.838

Rank 1 · TkA06G337670 · TK1151

Cytoplasm0.233

Rank 2 · TkA06G337670 · TK1151

Mitochondrion0.029

Rank 3 · TkA06G337670 · TK1151

Cell membrane0.027

Rank 4 · TkA06G337670 · TK1151

Endoplasmic reticulum0.020

Rank 5 · TkA06G337670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05699Dimer_Tnp_hAT102-183 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G337670	`PF05699`	Dimer_Tnp_hAT	102	183	1.3e-30	105.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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