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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G332650
Reference: TK1151 Chr: Chr06 Coordinates: 82901530-82903453 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1479 bp · TkA06G332650|TK1151|cDNA

CTTAAATGCTCTCCATTGTCCATTTCCGGTTTAAAACTTAAAACGAGACATTGGAGGGCAACCCTACCCATTTGCGATTCCCGGACCCCCAAACCAGCGTTCTCACTCTCCACTAGCCTTCACATCCCCATGACCTCCCTTCCTGCCGGCCCACCCCTTCCCTCGTCGCCATCCTCTCTCGTACTAATCCATAAATCTCTCTTTAGTTAGAGAAAATAAGAGTGGCAGTGCGCAAAACCTAGCCTTCGTTTCTTCCCCTT...

CDS

Download CDS FASTA

738 bp · TkA06G332650|TK1151|CDS

ATGCTCCCCCGAATCGCACAAATCCGACTCACGAGTTCCCACCCTCAAGTCTACGAACCATGTGACGACTCATTTGCTTTAGTGGACGCACTCTTAGCCGACCGAAAAAACCTCCTACACCACCGCCCCTCAATCTGCATGGAAGTTGGATCCGGTTCCGGTTACATCATCACCAGTCTCGCTCTCATCCTCCAAGAACTCAAAACCGCGCACTACTTCGCCACCGACATCAACCCGCAAGCCATAAAAGTAACCCAGGA...

Protein

Download Protein FASTA

245 aa · TkA06G332650|TK1151|PROTEIN

MLPRIAQIRLTSSHPQVYEPCDDSFALVDALLADRKNLLHHRPSICMEVGSGSGYIITSLALILQELKTAHYFATDINPQAIKVTQDTLQAHGVHAELLTTNIAAGLDRRLAGMVDVMVVNPPYVPTPEAEVGGDGIAAAWAGGENGRSVIDRILPVADKLLSEKGWLYMLFLAANDPLHICLQMREKGFAAKIVVQRSTEEESLHVIKFWRDLDGNEGVSIGKTGSPKGWEFFVSQFSRLSFRK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G332650
TK1151 IDTkA06G332650
OH-1004 IDLXL04_023406
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)97.800
Protein coverage (%)TK1151 93.878 / OH-1004 61.662
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G332650
LocationChr06:82901530-82903453 (+)
DescriptionSimilar to N6amt1: Methyltransferase N6AMT1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023406 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002184 cytoplasmic translational termination Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009404 toxin metabolic process Biological Process
GO:0018364 peptidyl-glutamine methylation Biological Process
GO:0018872 arsonoacetate metabolic process Biological Process
GO:0030307 positive regulation of cell growth Biological Process
GO:0032259 methylation Biological Process
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
GO:0045815 transcription initiation-coupled chromatin remodeling Biological Process
GO:0046686 response to cadmium ion Biological Process
GO:0060566 positive regulation of termination of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT4G02930
hsa:29104
mmu:67768
sce:YDR140W
spo:2542476
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.658
Rank 1 · TkA06G332650 · TK1151
Nucleus0.505
Rank 2 · TkA06G332650 · TK1151
Mitochondrion0.085
Rank 3 · TkA06G332650 · TK1151
Peroxisome0.060
Rank 4 · TkA06G332650 · TK1151
Plastid0.033
Rank 5 · TkA06G332650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13679Methyltransf_3227-98 aa
PF10017Methyltransf_3342-92 aa
PF12847Methyltransf_1844-120 aa
PF06325PrmA45-121 aa
PF05175MTS46-125 aa
PF13847Methyltransf_3146-121 aa
PF08242Methyltransf_1247-120 aa
PF13649Methyltransf_2547-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G332650PF13679Methyltransf_3227980.03114.9
TkA06G332650PF10017Methyltransf_3342920.01415.1
TkA06G332650PF12847Methyltransf_18441200.1612.7
TkA06G332650PF06325PrmA451210.0004220.6
TkA06G332650PF05175MTS461253.8e-0937.1
TkA06G332650PF13847Methyltransf_31461210.0001722.1
TkA06G332650PF08242Methyltransf_12471200.0001223.5
TkA06G332650PF13649Methyltransf_25471200.0005321.3
TkA06G332650PF08241Methyltransf_11481000.03115.6
TkA06G332650PF13578Methyltransf_24481170.06214.9
TkA06G332650PF01861BpsA_C571270.2211.5
TkA06G332650PF01170UPF0020661250.001119.4
TkA06G332650PF06962rRNA_methylase731320.03114.9
TkA06G332650PF23525Methyltransf_36741040.1911.6
TkA06G332650PF05175MTS1441713.8e-0937.1
TkA06G332650PF11746DUF33031972410.03115.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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