TkA06G326060 | RubberDandelionOmics

Gene overview

TkA06G326060

Reference: TK1151 Chr: Chr06 Coordinates: 81397367-81399089 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

996 bp · TkA06G326060|TK1151|cDNA

ATGACGGACCAGGCAGTGAGGAATGGGACAATGGTCCCAAAAGCTGAACCCCACCGGGATCAGCATAAAAGAAAACCCTGGAACAACAATAACACCAACAACAACAACCGCAACGAGAGCCACAACGACGACCGACAGATATCCTCTCAAGCACCACCCAAGAGGCCACACACCAATACTGTCTATGCTGCGGTACCTATCAACGCCGTGGCACCCCAACGGCAGTACGAGGGAAACCTTCCCCTTTGTAACAAGTGCCA...

CDS

Download CDS FASTA

996 bp · TkA06G326060|TK1151|CDS

ATGACGGACCAGGCAGTGAGGAATGGGACAATGGTCCCAAAAGCTGAACCCCACCGGGATCAGCATAAAAGAAAACCCTGGAACAACAATAACACCAACAACAACAACCGCAACGAGAGCCACAACGACGACCGACAGATATCCTCTCAAGCACCACCCAAGAGGCCACACACCAATACTGTCTATGCTGCGGTACCTATCAACGCCGTGGCACCCCAACGGCAGTACGAGGGAAACCTTCCCCTTTGTAACAAGTGCCA...

Protein

Download Protein FASTA

331 aa · TkA06G326060|TK1151|PROTEIN

MTDQAVRNGTMVPKAEPHRDQHKRKPWNNNNTNNNNRNESHNDDRQISSQAPPKRPHTNTVYAAVPINAVAPQRQYEGNLPLCNKCHFHHTPAPAETFSAQVVSRKGTLPDTKTESVFKSRSCAPGDQVKYAACTFANTALSWWSGPIQTIDITTANSMTWDDVFRGARQARLSKRGPFQILDRIGPITYRLSLSSELSNVSPWKGMTRFGKRGKLNPRYIGPFEILARIGPVAYKLKLPQELQNVHDTFHVSNLKKCRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G326060`
TK1151 ID	TkA06G326060
OH-1004 ID	LXL04_017785
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	46.100
Protein coverage (%)	TK1151 90.634 / OH-1004 53.154 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA06G326060`
Location	Chr06:81397367-81399089 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017785` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.472

Rank 1 · TkA06G326060 · TK1151

Cytoplasm0.393

Rank 2 · TkA06G326060 · TK1151

Mitochondrion0.093

Rank 3 · TkA06G326060 · TK1151

Extracellular0.060

Rank 4 · TkA06G326060 · TK1151

Cell membrane0.056

Rank 5 · TkA06G326060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03732PEG10_N-capsid114-163 aa

PF24626SH3_Tf2-1169-201 aa

PF31073DUF8803176-197 aa

PF22938Integrase_p58_C177-194 aa

PF24626SH3_Tf2-1208-259 aa

PF31073DUF8803209-258 aa

PF22938Integrase_p58_C222-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G326060	`PF03732`	PEG10_N-capsid	114	163	0.0023	19.0
TkA06G326060	`PF24626`	SH3_Tf2-1	169	201	7.1e-34	116.4
TkA06G326060	`PF31073`	DUF8803	176	197	5.1e-07	30.1
TkA06G326060	`PF22938`	Integrase_p58_C	177	194	7.2e-08	33.1
TkA06G326060	`PF24626`	SH3_Tf2-1	208	259	7.1e-34	116.4
TkA06G326060	`PF31073`	DUF8803	209	258	5.1e-07	30.1
TkA06G326060	`PF22938`	Integrase_p58_C	222	257	7.2e-08	33.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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