TkA06G324230 | RubberDandelionOmics

Gene overview

TkA06G324230

Reference: TK1151 Chr: Chr06 Coordinates: 81015371-81016283 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

666 bp · TkA06G324230|TK1151|cDNA

ATGCATATTTGGAGGCCTTTTGCTTCTTTCATTCTGCTGCAGCTTTGTAAGAAGATTGGTCATAAGAAACTGCCATGGCTGAAATATGACATGAAGAAGGCGGAGTATCTTGAAGCTAAGGAACTAGAAAAAGATGCAAAGAAGAAGCTGGATGAAGCAGCCAAAATGTTAAATGAACTTAAAGAACCTATTGAGAATCAAAAGCAAGAAAAGAAGGGACATGGTCTTAAATGTAGAAGATATAGAGACCTTCTAGATAA...

CDS

Download CDS FASTA

666 bp · TkA06G324230|TK1151|CDS

ATGCATATTTGGAGGCCTTTTGCTTCTTTCATTCTGCTGCAGCTTTGTAAGAAGATTGGTCATAAGAAACTGCCATGGCTGAAATATGACATGAAGAAGGCGGAGTATCTTGAAGCTAAGGAACTAGAAAAAGATGCAAAGAAGAAGCTGGATGAAGCAGCCAAAATGTTAAATGAACTTAAAGAACCTATTGAGAATCAAAAGCAAGAAAAGAAGGGACATGGTCTTAAATGTAGAAGATATAGAGACCTTCTAGATAA...

Protein

Download Protein FASTA

221 aa · TkA06G324230|TK1151|PROTEIN

MHIWRPFASFILLQLCKKIGHKKLPWLKYDMKKAEYLEAKELEKDAKKKLDEAAKMLNELKEPIENQKQEKKGHGLKCRRYRDLLDNTDTSHKQMIEKGNQLGAKVKGKYSDMDELEKQEQSRQERIGKAEKDLADTEMQLENLPVFQPPKDKIVIYASFTYFILFFFCNCFIKNIVFFCLIYMHNHFDFFHTIYFMFYFLSSVFYSTYDYNKYKESYFTF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G324230`
TK1151 ID	TkA06G324230
OH-1004 ID	LXL04_023466
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 75.566 / OH-1004 76.256 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G324230

Location Chr06:81015371-81016283 (+)

Description Similar to SMC5: Structural maintenance of chromosomes protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15920`	Core component of the SMC5-SMC6 complex that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	The STRUCTURAL MAINTENANCE OF CHROMOSOMES 5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.060525

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023466 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0007062 sister chromatid cohesion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0030915 Smc5-Smc6 complex Cellular Component

GO:0003697 single-stranded DNA binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G15920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411

Rank 1 · TkA06G324230 · TK1151

Nucleus0.273

Rank 2 · TkA06G324230 · TK1151

Mitochondrion0.149

Rank 3 · TkA06G324230 · TK1151

Endoplasmic reticulum0.144

Rank 4 · TkA06G324230 · TK1151

Golgi apparatus0.084

Rank 5 · TkA06G324230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16566CREPT23-119 aa

PF02413Caudo_TAP31-97 aa

PF19220Rod_CreS33-139 aa

PF00261Tropomyosin34-143 aa

PF29562DUF856738-66 aa

PF14362DUF440740-170 aa

PF02601Exonuc_VII_L45-142 aa

PF29562DUF856782-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G324230	`PF16566`	CREPT	23	119	6.6	7.5
TkA06G324230	`PF02413`	Caudo_TAP	31	97	8.7	7.2
TkA06G324230	`PF19220`	Rod_CreS	33	139	0.3	10.9
TkA06G324230	`PF00261`	Tropomyosin	34	143	1.0	9.4
TkA06G324230	`PF29562`	DUF8567	38	66	0.5	10.9
TkA06G324230	`PF14362`	DUF4407	40	170	0.00017	21.7
TkA06G324230	`PF02601`	Exonuc_VII_L	45	142	6.4	6.9
TkA06G324230	`PF29562`	DUF8567	82	144	0.5	10.9
TkA06G324230	`PF02413`	Caudo_TAP	112	138	8.7	7.2
TkA06G324230	`PF16566`	CREPT	114	146	6.6	7.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LFS8`	Arabidopsis thaliana	sp\|Q9LFS8\|SMC5_ARATH Structural maintenance of chromosomes protein 5	43.600%	Swiss-Prot	Medium

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