TkA06G315000 | RubberDandelionOmics

Gene overview

TkA06G315000

Reference: TK1151 Chr: Chr06 Coordinates: 78956989-78958357 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · TkA06G315000|TK1151|cDNA

ATGAAACTAAACAAACATGTTCATAAGGAAACCGGAAGTGAAGATTCTGCTCCAATTTACCTCGGGGATGCAGGTCGCCTTCCGGCTCGCGAAGTCCTGGCTTCCATGGGGGTCGACGTCCCTGACAACTGCTGTGCTCTTTGCAAATCGTCTGTGGAAAACATCAAGCACCTCTTCATAGAATGTGGCTGGGTCAGAGTTCTTTGGTCCAAGTTCCTCAACTGGTGGAATCTGCTCAACCTTCCAGCAAATATCAACAA...

CDS

Download CDS FASTA

525 bp · TkA06G315000|TK1151|CDS

ATGAAACTAAACAAACATGTTCATAAGGAAACCGGAAGTGAAGATTCTGCTCCAATTTACCTCGGGGATGCAGGTCGCCTTCCGGCTCGCGAAGTCCTGGCTTCCATGGGGGTCGACGTCCCTGACAACTGCTGTGCTCTTTGCAAATCGTCTGTGGAAAACATCAAGCACCTCTTCATAGAATGTGGCTGGGTCAGAGTTCTTTGGTCCAAGTTCCTCAACTGGTGGAATCTGCTCAACCTTCCAGCAAATATCAACAA...

Protein

Download Protein FASTA

174 aa · TkA06G315000|TK1151|PROTEIN

MKLNKHVHKETGSEDSAPIYLGDAGRLPAREVLASMGVDVPDNCCALCKSSVENIKHLFIECGWVRVLWSKFLNWWNLLNLPANINNIEDLLEWGEDRLETQKEKKVMLTSICAFLFSIWEVRNKIVFKNEVTSIDQAFIKVKEDAFFWIDSRAKKVGIDKREWLINPHKACKM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G315000`
TK1151 ID	TkA06G315000
OH-1004 ID	LXL04_019165
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	64.200
Protein coverage (%)	TK1151 85.057 / OH-1004 11.306 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA06G315000`
Location	Chr06:78956989-78958357 (-)
Description	Similar to PCMP-H81: Pentatricopeptide repeat-containing protein At3g57430, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_019165` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006397 mRNA processing Biological Process GO:0009451 RNA modification Biological Process GO:0031425 chloroplast RNA processing Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	ath:AT3G57430 ath:AT4G13650 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.423

Rank 1 · TkA06G315000 · TK1151

Nucleus0.171

Rank 2 · TkA06G315000 · TK1151

Cell membrane0.149

Rank 3 · TkA06G315000 · TK1151

Endoplasmic reticulum0.140

Rank 4 · TkA06G315000 · TK1151

Golgi apparatus0.103

Rank 5 · TkA06G315000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT25-69 aa

PF30148SPO74100-146 aa

PF13966zf-RVT133-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G315000	`PF13966`	zf-RVT	25	69	8.7e-09	36.6
TkA06G315000	`PF30148`	SPO74	100	146	0.12	13.4
TkA06G315000	`PF13966`	zf-RVT	133	133	8.7e-09	36.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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