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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G307720
Reference: TK1151 Chr: Chr06 Coordinates: 77279163-77282754 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1995 bp · TkA06G307720|TK1151|cDNA

CACACACTTTAGTATCCCCTAAACTTAATTCACACCAGACCCGGATCCGCCAATTTTACCCAAATATCGTCTTTACGTAATTTGCAATTACAGTAGGATTTGGATTTCTGAAAGTTGAGAACCTGCTGCGCTATTGCCTTCTTGTTGTTGGTTAAACCAAACTGACAAAAGGGCTCGCGGTTATTACTAAAACCCTAAACCTTCCACTGATAGAGACGACACAGTGCGATGTCTGCCCTAGAAATCGAAGCTCGCGATGT...

CDS

Download CDS FASTA

1239 bp · TkA06G307720|TK1151|CDS

ATGTCTGCCCTAGAAATCGAAGCTCGCGATGTGATAAAAATAGTTCTTCAATTCTGCAAAGAGAACTCTTTGCATCAAACATTCCAAACATTACAAAGCGAGTGCCAAGTGTCTTTAAACACAGTGGACAGCCTTGAAACATTTGTAGCTGATATCAACAGTGGTAGATGGGATACAATATTACCTCAAGTGGCACAACTTAAGCTTCCTAGAAAGAAACTTGAAGATTTATATGAGCAGATTGTTCTAGAAATGATTGA...

Protein

Download Protein FASTA

412 aa · TkA06G307720|TK1151|PROTEIN

MSALEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSLETFVADINSGRWDTILPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMTVMKQEQPERYLRLEHLLVRTYFDPNEAYQESTKEKRRSQIAQGITEEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDVDDKYPTTLGHTIKFGKKSHPESARFSPDGQFLVSCSVDGFIEVWDHISGKLKKDLQYQAEESF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G307720
TK1151 IDTkA06G307720
OH-1004 IDLXL04_035553
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 99.029 / OH-1004 79.532
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G307720
LocationChr06:77279163-77282754 (-)
DescriptionSimilar to SMU1: Suppressor of mec-8 and unc-52 protein homolog 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g73720 Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development.
Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development.2009 · DOI: 10.1104/pp.109.141705

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035553 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000381 regulation of alternative mRNA splicing, via spliceosome Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0008380 RNA splicing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0071005 U2-type precatalytic spliceosome Cellular Component
GO:0071011 precatalytic spliceosome Cellular Component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
ath:AT1G73720
bta:540842
cge:100736555
hsa:55234
mmu:74255
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.529
Rank 1 · TkA06G307720 · TK1151
Nucleus0.473
Rank 2 · TkA06G307720 · TK1151
Cell membrane0.060
Rank 3 · TkA06G307720 · TK1151
Mitochondrion0.052
Rank 4 · TkA06G307720 · TK1151
Lysosome / Vacuole0.043
Rank 5 · TkA06G307720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17814LisH_TPL7-37 aa
PF25391WD40_Gbeta11-59 aa
PF076977TMR-HDED44-151 aa
PF21359zf_topless159-174 aa
PF25391WD40_Gbeta198-387 aa
PF25047Beta-prop_TEP1_2nd207-247 aa
PF11715Beta-prop_Nup120_160208-248 aa
PF21029RMC1_N209-240 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G307720PF17814LisH_TPL7379e-1657.9
TkA06G307720PF25391WD40_Gbeta11591.9e-1454.1
TkA06G307720PF076977TMR-HDED441510.411.4
TkA06G307720PF21359zf_topless1591740.08213.2
TkA06G307720PF25391WD40_Gbeta1983871.9e-1454.1
TkA06G307720PF25047Beta-prop_TEP1_2nd2072471.1e-1971.4
TkA06G307720PF11715Beta-prop_Nup120_1602082485e-0626.2
TkA06G307720PF21029RMC1_N2092400.07613.8
TkA06G307720PF23409Beta-prop_EML2102534.9e-1763.0
TkA06G307720PF16529Ge1_WD402102421.8e-0731.2
TkA06G307720PF23383Beta-prop_IFT140_1st2102957.4e-0728.9
TkA06G307720PF23775Beta-prop_RIG_2nd2122561.2e-0732.2
TkA06G307720PF23414Beta-prop_EML_22133001.8e-1970.9
TkA06G307720PF24814WD40_Prp192143226.3e-2795.1
TkA06G307720PF23769Beta-prop_WDR75_2nd2142520.0008219.0
TkA06G307720PF23749DUF71652163290.001118.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W117Arabidopsis thalianasp|Q8W117|SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 185.000%Swiss-ProtHigh

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