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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G289610
Reference: TK1151 Chr: Chr06 Coordinates: 72944826-72948671 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3304 bp · TkA06G289610|TK1151|cDNA

AATGACCATACACGCATATATGCGACAACTGTATCATCCCTGGTCTCCACATTATTTTTGTAATGAAAGCATTCATCTCTTACCCTCCCGATTCTCTCTCTCTTTCTTGCAAAAATTCCATCTATTTTCTCTCTCTTTCCTTTTTCTAATCTTTACCTTCATCACCGCCGTTCAATCTGTCTCATAAAAGCTTCTTTTTCCCCCAATCACACATTTCCTGCAAAGGAAATTGCAATTTTCATCGTTCCATCATCAAAACC...

CDS

Download CDS FASTA

2823 bp · TkA06G289610|TK1151|CDS

ATGATGAAACCCTTCCTGGGTTATGAAATCTTGGGTCGATTTCGCCTATGTGTCGTCTGTTTGTTGTCTGTTTTGATCGTTTTTGTTAACTCACAGTCGAGCTCGAACGATGCTGCTGTAATGCAGGCTCTGAAATCGAATCTCAGTCCACCCAAATCACTGGATTGGTCCGACCCGAATCCTTGTAAATGGCAGCAAATTCAGTGCTCAAGAGACAACCGGGTCACCAGGATCCAAGCCGGTAACCAGAACCTCAAAGG...

Protein

Download Protein FASTA

940 aa · TkA06G289610|TK1151|PROTEIN

MMKPFLGYEILGRFRLCVVCLLSVLIVFVNSQSSSNDAAVMQALKSNLSPPKSLDWSDPNPCKWQQIQCSRDNRVTRIQAGNQNLKGSLPQTLNNLTELQVLEFQNNQLTGSLPSLSGLTQLQNLLLSSNSLSSIPTDFFDGMSSLQHVYLDYNRFSSWSIPDSLKSASSLQVFSATSANITGKIPDFLGGDALAGLTTLHLSFNYLEGGLPSSFSGSSIQTLWLNGQSSRSKLNGTLDVLQNMTQLTEAWLHGNLFSGP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G289610
TK1151 IDTkA06G289610
OH-1004 IDLXL04_023627
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G289610
LocationChr06:72944826-72948671 (+)
DescriptionSimilar to TMK1: Receptor protein kinase TMK1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g66150 Transmembrane kinase receptor.
The TMK1 gene from Arabidopsis codes for a protein with structural and biochemical characteristics of a receptor protein kinase.1992 · DOI: 10.1105/tpc.4.10.1263
Receptor-like kinase activity in membranes of Arabidopsis thaliana.1993 · DOI: 10.1016/0014-5793(93)80676-l
At2g01820 Involved in auxin signal transduction and cell expansion and proliferation regulation. No verified direct reference in this release
At1g24650 Involved in auxin signal transduction and cell expansion and proliferation regulation. No verified direct reference in this release
At3g23750 Involved in auxin signal transduction and cell expansion and proliferation regulation.
Identification of Arabidopsis BAK1-associating receptor-like kinase 1 (BARK1) and characterization of its gene expression and brassinosteroid-regulated root phenotypes.2013 · DOI: 10.1093/pcp/pct106

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0448000 Transmembrane kinase receptor involved in the regulation of reactive oxygen species (ROS) homeostasis, chloroplast development and leaf senescence.
WATER-SOAKED SPOT1 Controls Chloroplast Development and Leaf Senescence via Regulating Reactive Oxygen Species Homeostasis in Rice.2022 · DOI: 10.3389/fpls.2022.918673
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023627 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0007165 signal transduction Biological Process
GO:0009555 pollen development Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010600 regulation of auxin biosynthetic process Biological Process
GO:0010928 regulation of auxin mediated signaling pathway Biological Process
GO:1900055 regulation of leaf senescence Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G24650
ath:AT1G66150
ath:AT2G01820
ath:AT3G23750
dosa:Os11g0448000
osa:4350438
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868
Rank 1 · TkA06G289610 · TK1151
Endoplasmic reticulum0.076
Rank 2 · TkA06G289610 · TK1151
Cytoplasm0.076
Rank 3 · TkA06G289610 · TK1151
Nucleus0.048
Rank 4 · TkA06G289610 · TK1151
Lysosome / Vacuole0.030
Rank 5 · TkA06G289610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_235-70 aa
PF00560LRR_181-96 aa
PF12799LRR_481-113 aa
PF13855LRR_882-132 aa
PF24141LRR_ComC82-133 aa
PF23598LRR_1488-173 aa
PF25019LRR_R13L1-DRL2189-128 aa
PF23952LRR_EndoS92-149 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G289610PF08263LRRNT_235706.9e-1246.2
TkA06G289610PF00560LRR_181961e-1658.2
TkA06G289610PF12799LRR_4811131.2e-1557.9
TkA06G289610PF13855LRR_8821324.1e-1762.4
TkA06G289610PF24141LRR_ComC821330.01415.8
TkA06G289610PF23598LRR_14881735.5e-0522.8
TkA06G289610PF25019LRR_R13L1-DRL21891280.02515.2
TkA06G289610PF23952LRR_EndoS921499.67.2
TkA06G289610PF12799LRR_4971351.2e-1557.9
TkA06G289610PF00560LRR_1991151e-1658.2
TkA06G289610PF12799LRR_41201591.2e-1557.9
TkA06G289610PF13855LRR_81211734.1e-1762.4
TkA06G289610PF00560LRR_11211391e-1658.2
TkA06G289610PF00560LRR_11451661e-1658.2
TkA06G289610PF12799LRR_41451811.2e-1557.9
TkA06G289610PF08263LRRNT_21541606.9e-1246.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P43298Arabidopsis thalianasp|P43298|TMK1_ARATH Receptor protein kinase TMK162.000%Swiss-ProtHigh
Q9SIT1Arabidopsis thalianasp|Q9SIT1|TMK3_ARATH Receptor-like kinase TMK358.000%Swiss-ProtHigh
Q9FYK0Arabidopsis thalianasp|Q9FYK0|TMK2_ARATH Receptor-like kinase TMK255.800%Swiss-ProtHigh
Q9LK43Arabidopsis thalianasp|Q9LK43|TMK4_ARATH Receptor-like kinase TMK447.200%Swiss-ProtMedium
Q2R560Oryza sativa subsp. japonicasp|Q2R560|WSS1_ORYSJ Receptor protein kinase WSS142.600%Swiss-ProtMedium

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