TkA06G282430 | RubberDandelionOmics

Gene overview

TkA06G282430

Reference: TK1151 Chr: Chr06 Coordinates: 71314409-71314935 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

429 bp · TkA06G282430|TK1151|cDNA

ATGAGCACGAGACTTCAGATTAGCTTTCCTCTTCTGCAACTGCAGATTGTCTGGCTAGGAAGAGTGCCTCTAAAGCGAGGAGGGGCAAAAACACCAGTGAACGCTAATGCTAACCAATCTGATTATGGAATTGGAGGCGACGAAGGAGAGTGTAAAGAAGGTCGAGAGATTAAAGTGAAGAATAGGCTCAGAAAGCTTTACACCAACAATGGACCGCAATGGAGTCATGTGGTTTTCGAACACCCAGCTTCGTTGCAAAC...

CDS

Download CDS FASTA

429 bp · TkA06G282430|TK1151|CDS

ATGAGCACGAGACTTCAGATTAGCTTTCCTCTTCTGCAACTGCAGATTGTCTGGCTAGGAAGAGTGCCTCTAAAGCGAGGAGGGGCAAAAACACCAGTGAACGCTAATGCTAACCAATCTGATTATGGAATTGGAGGCGACGAAGGAGAGTGTAAAGAAGGTCGAGAGATTAAAGTGAAGAATAGGCTCAGAAAGCTTTACACCAACAATGGACCGCAATGGAGTCATGTGGTTTTCGAACACCCAGCTTCGTTGCAAAC...

Protein

Download Protein FASTA

142 aa · TkA06G282430|TK1151|PROTEIN

MSTRLQISFPLLQLQIVWLGRVPLKRGGAKTPVNANANQSDYGIGGDEGECKEGREIKVKNRLRKLYTNNGPQWSHVVFEHPASLQTLAMDPVKKKEIVDDLPTFSNAENPIGRAWKRGYLLYGPPGTGKSTRSPPSIIVID

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G282430`
TK1151 ID	TkA06G282430
OH-1004 ID	LXL04_023610
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G282430

Location Chr06:71314409-71314935 (+)

Description Similar to AATP1: AAA-ATPase ASD, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40010`	Required to regulate morphology and anatomy during seed maturation.	No verified direct reference in this release
`At5g40000`	AAA-ATPase At5g40000.	No verified direct reference in this release
`At3g28610`	AAA-ATPase At3g28610.	No verified direct reference in this release
`At3g28510`	AAA-ATPase At3g28510.	No verified direct reference in this release
`At3g28540`	AAA-ATPase At3g28540.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023610 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000304 response to singlet oxygen Biological Process

GO:0006950 response to stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010154 fruit development Biological Process

GO:0010431 seed maturation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT3G28580

ath:AT3G28600

ath:AT3G28610

ath:AT5G40000

ath:AT5G40010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.400

Rank 1 · TkA06G282430 · TK1151

Nucleus0.385

Rank 2 · TkA06G282430 · TK1151

Mitochondrion0.119

Rank 3 · TkA06G282430 · TK1151

Cell membrane0.102

Rank 4 · TkA06G282430 · TK1151

Endoplasmic reticulum0.094

Rank 5 · TkA06G282430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13555AAA_29118-132 aa

PF13191AAA_16118-132 aa

PF00004AAA120-132 aa

PF13479AAA_24120-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G282430	`PF13555`	AAA_29	118	132	0.2	12.2
TkA06G282430	`PF13191`	AAA_16	118	132	0.21	12.8
TkA06G282430	`PF00004`	AAA	120	132	0.062	14.5
TkA06G282430	`PF13479`	AAA_24	120	133	0.16	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FLD5`	Arabidopsis thaliana	sp\|Q9FLD5\|ASD_ARATH AAA-ATPase ASD, mitochondrial	59.800%	Swiss-Prot	Medium
`F4KFX5`	Arabidopsis thaliana	sp\|F4KFX5\|AATPJ_ARATH AAA-ATPase At5g40000	58.700%	Swiss-Prot	Medium
`Q9LJJ5`	Arabidopsis thaliana	sp\|Q9LJJ5\|AATPB_ARATH AAA-ATPase At3g28610	52.700%	Swiss-Prot	Medium
`Q9LH84`	Arabidopsis thaliana	sp\|Q9LH84\|AATP5_ARATH AAA-ATPase At3g28510	53.800%	Swiss-Prot	Medium
`Q9LH82`	Arabidopsis thaliana	sp\|Q9LH82\|AATP7_ARATH AAA-ATPase At3g28540	52.700%	Swiss-Prot	Medium

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