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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G261700
Reference: TK1151 Chr: Chr06 Coordinates: 66686008-66689421 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2064 bp · TkA06G261700|TK1151|cDNA

ATGGAATTATTTTTAAAAGGTAAAGACAAGGGAAAAGAAATATGGCGATCAATAACTGAAGGTCCACACATCCCTGCCAGGACTGCTACTGTTAACAATGTAGCAAGAACCCTTGCTGCTGAGGGAACTGTGGAACCTCAGCTTACTGCTCTCGACCTTGAAAAAATTCCTGCCGACAATTCAGCCATCTCTGAGTTGGTCTTTGGAATCCCTCCCTCACTTTTTGCTCACATCAAACACTACAAAAGTGAAAAGGAGAT...

CDS

Download CDS FASTA

2064 bp · TkA06G261700|TK1151|CDS

ATGGAATTATTTTTAAAAGGTAAAGACAAGGGAAAAGAAATATGGCGATCAATAACTGAAGGTCCACACATCCCTGCCAGGACTGCTACTGTTAACAATGTAGCAAGAACCCTTGCTGCTGAGGGAACTGTGGAACCTCAGCTTACTGCTCTCGACCTTGAAAAAATTCCTGCCGACAATTCAGCCATCTCTGAGTTGGTCTTTGGAATCCCTCCCTCACTTTTTGCTCACATCAAACACTACAAAAGTGAAAAGGAGAT...

Protein

Download Protein FASTA

687 aa · TkA06G261700|TK1151|PROTEIN

MELFLKGKDKGKEIWRSITEGPHIPARTATVNNVARTLAAEGTVEPQLTALDLEKIPADNSAISELVFGIPPSLFAHIKHYKSEKEIWDFLQDLLEGSENVKEKRQSSVVNDYDTFTTSPCETVKSVANRFRIYINNLSDHDTLREISGGSLALIIKDGHDSSESTHVFSAISPISEEYYLDQIEMDRQSKPKVKNSAYYVKKAMDIAEAEKAFMVTTKKDLDGRAKSCTKKHCLTKNGSSSKEVTWYIDSGYSLHMTGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G261700
TK1151 IDTkA06G261700
OH-1004 IDLXL04_019829
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)56.500
Protein coverage (%)TK1151 65.357 / OH-1004 17.780
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G261700
LocationChr06:66686008-66689421 (-)
DescriptionSimilar to RE1: Retrovirus-related Pol polyprotein from transposon RE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_019829 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0042575 DNA polymerase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.589
Rank 1 · TkA06G261700 · TK1151
Nucleus0.440
Rank 2 · TkA06G261700 · TK1151
Mitochondrion0.051
Rank 3 · TkA06G261700 · TK1151
Endoplasmic reticulum0.045
Rank 4 · TkA06G261700 · TK1151
Cell membrane0.041
Rank 5 · TkA06G261700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_257-141 aa
PF23135TRI4_N74-102 aa
PF10377ATG11119-209 aa
PF25597SH3_retrovirus218-229 aa
PF16974NAR2224-284 aa
PF22936Pol_BBD247-321 aa
PF00665rve382-453 aa
PF29688TnsB_C408-472 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G261700PF14223Retrotran_gag_2571412e-0628.4
TkA06G261700PF23135TRI4_N741020.1912.4
TkA06G261700PF10377ATG111192090.02215.6
TkA06G261700PF25597SH3_retrovirus2182291.5e-0835.0
TkA06G261700PF16974NAR22242840.1112.8
TkA06G261700PF22936Pol_BBD2473211.2e-1145.5
TkA06G261700PF00665rve3824533.7e-0731.0
TkA06G261700PF29688TnsB_C4084720.001119.4
TkA06G261700PF13683rve_34424780.001319.2
TkA06G261700PF22936Pol_BBD5265521.2e-1145.5
TkA06G261700PF25597SH3_retrovirus5275651.5e-0835.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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