TkA06G182610 | RubberDandelionOmics

Gene overview

TkA06G182610

Reference: TK1151 Chr: Chr06 Coordinates: 47682020-47683773 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1360 bp · TkA06G182610|TK1151|cDNA

GAAAAAGGCACCTCCACCCCACCCCACCTCCTACCCCATCCCACTCCCTAGCTCTTATCTCTTTGTGGTTTAAAAAGAGCTTATTGCTGTTTCTCTAGTGTCTTTGCCACCCCCATGTTCCTTTCTACATCCAAGATCCATACCCATAAGAGTACTCACATTACACACACACAGACAGCTATCAATTTATGCAGCTTCTGATCGAGCTCTTAAATTTGAGTTTTTGGCCTAACTTTACTCATTAAAAAAAGGTTACTTTT...

CDS

Download CDS FASTA

843 bp · TkA06G182610|TK1151|CDS

ATGTCCTTCCTCCCACCTGAACCCATGTTTTTTGGCTATGAAGATGACCACCACCCTCCTCATGACTACCAAGGTGTTCAGACACTCTTAATGAGAAGATCCATGTCGTATTCCGGTATGGACAGATGTGAAGAAACCCGTGGTGGTGGTGGTGCCGCCGATGATGACATGTCAGAAGACGACGGATCACAGCTAGGAGAAAAGAAGAGAAGGCTGAATTTAGAACAAGTTAAAGCTCTTGAAAAAAGCTTTGAGCTCGG...

Protein

Download Protein FASTA

280 aa · TkA06G182610|TK1151|PROTEIN

MSFLPPEPMFFGYEDDHHPPHDYQGVQTLLMRRSMSYSGMDRCEETRGGGGAADDDMSEDDGSQLGEKKRRLNLEQVKALEKSFELGNKLEPERKSQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDILKRQFESVKADNDALKNLNKKLHAELVAVKGGESNGVRPINLNKETEGSWSNGSENSCDLNTVAGTMTPSEESPIFYTQISNNMYPTMSSMGQNSSGLTQFLQNSSTTDLLSQRLNQTVGNEGFCNMFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G182610`
TK1151 ID	TkA06G182610
OH-1004 ID	LXL04_006273
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	60.100
Protein coverage (%)	TK1151 99.286 / OH-1004 98.795 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G182610

Location Chr06:47682020-47683773 (+)

Description Similar to HAT7: Homeobox-leucine zipper protein HAT7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15150`	Probable transcription factor.	No verified direct reference in this release
`At1g69780`	Probable transcription factor that may act in the sucrose-signaling pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0170600`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2XD08`	Probable transcription factor.	No verified direct reference in this release
`UniProt: A2Z734`	Probable transcription factor.	No verified direct reference in this release
`Os10g0404900`	Probable transcription factor.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048826 cotyledon morphogenesis Biological Process

GO:0080022 primary root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G69780

ath:AT3G01220

ath:AT5G15150

dosa:Os03g0170600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkA06G182610 · TK1151

Cytoplasm0.078

Rank 2 · TkA06G182610 · TK1151

Cell membrane0.021

Rank 3 · TkA06G182610 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA06G182610 · TK1151

Plastid0.010

Rank 5 · TkA06G182610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00046Homeodomain68-121 aa

PF05920Homeobox_KN92-119 aa

PF02183HALZ123-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G182610	`PF00046`	Homeodomain	68	121	2.1e-16	60.2
TkA06G182610	`PF05920`	Homeobox_KN	92	119	7.7e-05	23.2
TkA06G182610	`PF02183`	HALZ	123	161	6.6e-14	52.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q00466`	Arabidopsis thaliana	sp\|Q00466\|HAT7_ARATH Homeobox-leucine zipper protein HAT7	42.000%	Swiss-Prot	Medium
`Q8LC03`	Arabidopsis thaliana	sp\|Q8LC03\|ATB13_ARATH Homeobox-leucine zipper protein ATHB-13	50.000%	Swiss-Prot	High
`Q8S7W9`	Oryza sativa subsp. japonica	sp\|Q8S7W9\|HOX21_ORYSJ Homeobox-leucine zipper protein HOX21	47.200%	Swiss-Prot	Medium
`A2XD08`	Oryza sativa subsp. indica	sp\|A2XD08\|HOX21_ORYSI Homeobox-leucine zipper protein HOX21	67.300%	Swiss-Prot	Medium
`A2Z734`	Oryza sativa subsp. indica	sp\|A2Z734\|HOX23_ORYSI Homeobox-leucine zipper protein HOX23	65.200%	Swiss-Prot	Low
`Q94GL5`	Oryza sativa subsp. japonica	sp\|Q94GL5\|HOX23_ORYSJ Homeobox-leucine zipper protein HOX23	65.200%	Swiss-Prot	Low

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