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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G177730
Reference: TK1151 Chr: Chr06 Coordinates: 46559411-46560061 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

651 bp · TkA06G177730|TK1151|cDNA

ATGAAACAAAAGGGCGTGGACCCCACTTTAGAGCACTATACGTGCATTGTTGGACTTTTAAGTAAGGCGGGACGATTAAATGAAGCTTTAAATTTCATGAAATCAACAAAAATCAAATGGGACACAGTTGCATGGCGTAAGTTACTCAATGCATGTCATGTTCACAGAAATTACACTTTAGGTACCCAAGTTGGAAACTTTATTACGAATTTGGACCCTGAAGATGAAGGAACTTACACCCTTTTGTCGAATATGTATGT...

CDS

Download CDS FASTA

651 bp · TkA06G177730|TK1151|CDS

ATGAAACAAAAGGGCGTGGACCCCACTTTAGAGCACTATACGTGCATTGTTGGACTTTTAAGTAAGGCGGGACGATTAAATGAAGCTTTAAATTTCATGAAATCAACAAAAATCAAATGGGACACAGTTGCATGGCGTAAGTTACTCAATGCATGTCATGTTCACAGAAATTACACTTTAGGTACCCAAGTTGGAAACTTTATTACGAATTTGGACCCTGAAGATGAAGGAACTTACACCCTTTTGTCGAATATGTATGT...

Protein

Download Protein FASTA

216 aa · TkA06G177730|TK1151|PROTEIN

MKQKGVDPTLEHYTCIVGLLSKAGRLNEALNFMKSTKIKWDTVAWRKLLNACHVHRNYTLGTQVGNFITNLDPEDEGTYTLLSNMYVKGENFSGVTKVRELMKKKKIKKEPGLSWVEIKNQTHVFVSGDDKHAEFVAILDKLKDLFGKIKTIGYVADMGNVLDDVEDEQKEDNIRFHSEKLAVGYGLLKTHEEVPIRIMKNLRICDDCHCVMKFVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G177730
TK1151 IDTkA06G177730
OH-1004 IDLXL04_024111
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G177730
LocationChr06:46559411-46560061 (+)
DescriptionSimilar to EMB2744: Pentatricopeptide repeat-containing protein At5g39680
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g39680 Pentatricopeptide repeat-containing protein At5g39680. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At5g06540 Pentatricopeptide repeat-containing protein At5g06540. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024111 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G03880
ath:AT2G22070
ath:AT4G13650
ath:AT4G37380
ath:AT5G39680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.633
Rank 1 · TkA06G177730 · TK1151
Plastid0.148
Rank 2 · TkA06G177730 · TK1151
Nucleus0.093
Rank 3 · TkA06G177730 · TK1151
Cytoplasm0.062
Rank 4 · TkA06G177730 · TK1151
Peroxisome0.012
Rank 5 · TkA06G177730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_31-20 aa
PF13041PPR_21-9 aa
PF12854PPR_14-33 aa
PF12921ATP138-59 aa
PF01535PPR12-34 aa
PF13041PPR_212-52 aa
PF07035RMC1_C12-69 aa
PF20431E_motif32-39 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G177730PF13812PPR_31208.3e-0626.5
TkA06G177730PF13041PPR_2190.0004421.0
TkA06G177730PF12854PPR_14330.005417.2
TkA06G177730PF12921ATP138590.01515.9
TkA06G177730PF01535PPR12347.9e-0523.4
TkA06G177730PF13041PPR_212520.0004421.0
TkA06G177730PF07035RMC1_C12690.04713.8
TkA06G177730PF20431E_motif32396.4e-1555.9
TkA06G177730PF13812PPR_333638.3e-0626.5
TkA06G177730PF20431E_motif571176.4e-1555.9
TkA06G177730PF07686V-set68980.1812.7
TkA06G177730PF12921ATP13751300.01515.9
TkA06G177730PF13041PPR_2761080.0004421.0
TkA06G177730PF12854PPR_176850.005417.2
TkA06G177730PF13812PPR_3781088.3e-0626.5
TkA06G177730PF01535PPR781077.9e-0523.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FK93Arabidopsis thalianasp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g3968052.100%Swiss-ProtHigh
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial46.200%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365044.100%Swiss-ProtMedium
Q9SHZ8Arabidopsis thalianasp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g2207043.800%Swiss-ProtMedium
Q9FG16Arabidopsis thalianasp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g0654042.800%Swiss-ProtMedium

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