TkA06G177470 | RubberDandelionOmics

Gene overview

TkA06G177470

Reference: TK1151 Chr: Chr06 Coordinates: 46506708-46507694 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

669 bp · TkA06G177470|TK1151|cDNA

ATGGAGACAACCCAACCTACTCTTCCCAAGTACTTGCAGAATTCTCAAGTGTCTCAAGAGTTCAAGGATCTCACTTCCAGTTTGCCCAAAAACAGAGGGTGGGTTATACCTATCGTACACCAATACCAAGGTTTCTGGCATCATGATTGGCAACTCCAAGGAGTTCTCTCATATCAAAAACATTTTCAAGCACAAGACACCGATATCCTACTTGTTACCACACCAAAATCTGGCACCACCTGGTTAAAAGCAATCTCTTT...

CDS

Download CDS FASTA

669 bp · TkA06G177470|TK1151|CDS

ATGGAGACAACCCAACCTACTCTTCCCAAGTACTTGCAGAATTCTCAAGTGTCTCAAGAGTTCAAGGATCTCACTTCCAGTTTGCCCAAAAACAGAGGGTGGGTTATACCTATCGTACACCAATACCAAGGTTTCTGGCATCATGATTGGCAACTCCAAGGAGTTCTCTCATATCAAAAACATTTTCAAGCACAAGACACCGATATCCTACTTGTTACCACACCAAAATCTGGCACCACCTGGTTAAAAGCAATCTCTTT...

Protein

Download Protein FASTA

222 aa · TkA06G177470|TK1151|PROTEIN

METTQPTLPKYLQNSQVSQEFKDLTSSLPKNRGWVIPIVHQYQGFWHHDWQLQGVLSYQKHFQAQDTDILLVTTPKSGTTWLKAISFAITNRIQNPKDLFVSLFHFSNKLRPQHMGANSMEEVFELFCEGVSLYGPYWEHVLGFWNESLRRPKEVLFLKYEDMKAQPGTQVNKEGYLPTGQMNKAFFRKGEVGDWKNHLTAEMAERLDMITEHKFEGSGLKF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G177470`
TK1151 ID	TkA06G177470
OH-1004 ID	LXL04_024108
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	67.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G177470

Location Chr06:46506708-46507694 (+)

Description Similar to SOT12: Cytosolic sulfotransferase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g03760`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the stereospecific sulfate conjugation of 24-epibrassinosteroids.	Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760).2007 · DOI: 10.1007/s00425-006-0413-y A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis.2010 · DOI: 10.1111/j.1365-3040.2010.02156.x
`At2g27570`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release
`At2g03770`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release
`At3g45070`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of flavones and flavonols.	Biochemical and molecular characterization of flavonoid 7-sulfotransferase from Arabidopsis thaliana.2006 · DOI: 10.1016/j.plaphy.2006.10.004
`At3g45080`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024108 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009694 jasmonic acid metabolic process Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009806 lignan metabolic process Biological Process

GO:0009812 flavonoid metabolic process Biological Process

GO:0016131 brassinosteroid metabolic process Biological Process

GO:0051923 sulfation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT2G03760

ath:AT2G03770

ath:AT3G45070

ath:AT3G45080

ath:AT5G07010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.850

Rank 1 · TkA06G177470 · TK1151

Nucleus0.229

Rank 2 · TkA06G177470 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA06G177470 · TK1151

Peroxisome0.044

Rank 4 · TkA06G177470 · TK1151

Mitochondrion0.035

Rank 5 · TkA06G177470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00685Sulfotransfer_166-92 aa

PF13469Sulfotransfer_369-85 aa

PF00685Sulfotransfer_194-173 aa

PF13469Sulfotransfer_3139-172 aa

PF00685Sulfotransfer_1180-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G177470	`PF00685`	Sulfotransfer_1	66	92	1.9e-39	136.4
TkA06G177470	`PF13469`	Sulfotransfer_3	69	85	0.18	12.8
TkA06G177470	`PF00685`	Sulfotransfer_1	94	173	1.9e-39	136.4
TkA06G177470	`PF13469`	Sulfotransfer_3	139	172	0.18	12.8
TkA06G177470	`PF00685`	Sulfotransfer_1	180	219	1.9e-39	136.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P52839`	Arabidopsis thaliana	sp\|P52839\|SOT12_ARATH Cytosolic sulfotransferase 12	34.300%	Swiss-Prot	Medium
`Q8RUC1`	Arabidopsis thaliana	sp\|Q8RUC1\|SOT4_ARATH Cytosolic sulfotransferase 4	39.000%	Swiss-Prot	Medium
`Q9ZPQ5`	Arabidopsis thaliana	sp\|Q9ZPQ5\|SOT13_ARATH Cytosolic sulfotransferase 13	33.900%	Swiss-Prot	Medium
`Q9M1V2`	Arabidopsis thaliana	sp\|Q9M1V2\|SOT5_ARATH Cytosolic sulfotransferase 5	33.100%	Swiss-Prot	Medium
`Q9M1V1`	Arabidopsis thaliana	sp\|Q9M1V1\|SOT6_ARATH Cytosolic sulfotransferase 6	33.400%	Swiss-Prot	Medium

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