RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G177320
Reference: TK1151 Chr: Chr06 Coordinates: 46463541-46464038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

498 bp · TkA06G177320|TK1151|cDNA

ATGTCATCTTCTTCGGATCAGGAATTTGATCAGTCACTACGCGATTTCATCACATCATTTGTCAGAACCGCCTTCGCCACCGCTCCACCATCACAATATCACGACGGAGAAGAAGAAACCCTCGTCTTCACGTTTTATTCTAATCATCCAGGAAGTCTCGTGAAGGAGGGGCCGTTACCGGCGTCAAAAGCGGCAATCGAAGCCATTCCGTCGGTTACAGCGACGGAGGAAGAAGATTGTGCGATATGTTTGACGGATTT...

CDS

Download CDS FASTA

498 bp · TkA06G177320|TK1151|CDS

ATGTCATCTTCTTCGGATCAGGAATTTGATCAGTCACTACGCGATTTCATCACATCATTTGTCAGAACCGCCTTCGCCACCGCTCCACCATCACAATATCACGACGGAGAAGAAGAAACCCTCGTCTTCACGTTTTATTCTAATCATCCAGGAAGTCTCGTGAAGGAGGGGCCGTTACCGGCGTCAAAAGCGGCAATCGAAGCCATTCCGTCGGTTACAGCGACGGAGGAAGAAGATTGTGCGATATGTTTGACGGATTT...

Protein

Download Protein FASTA

165 aa · TkA06G177320|TK1151|PROTEIN

MSSSSDQEFDQSLRDFITSFVRTAFATAPPSQYHDGEEETLVFTFYSNHPGSLVKEGPLPASKAAIEAIPSVTATEEEDCAICLTDFSGSAGEAKELPCRHRYHSDCIMKWLGIHGSCPVCRYEMPLDEEEKRRRDDDAGEWWRVMITVTSRTPVTEAGQNSSDP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA06G177320
TK1151 IDTkA06G177320
OH-1004 IDLXL04_024105
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 92.179
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G177320
LocationChr06:46463541-46464038 (+)
DescriptionSimilar to MPSR1: E3 ubiquitin-protein ligase MPSR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g26800 E3 ubiquitin-protein ligase involved in protein quality control (PQC) under proteotoxic stress.
MPSR1 is a cytoplasmic PQC E3 ligase for eliminating emergent misfolded proteins in Arabidopsis thaliana.2017 · DOI: 10.1073/pnas.1713574114
At3g19950 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. No verified direct reference in this release
At5g59550 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024105 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0061635 regulation of protein complex stability Biological Process
GO:0071218 cellular response to misfolded protein Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system Biological Process
GO:0090378 seed trichome elongation Biological Process
KEGG gene cross-reference
ath:AT1G26800
ath:AT3G19950
ath:AT5G59550
dosa:Os05g0488800
osa:4339152
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.671
Rank 1 · TkA06G177320 · TK1151
Nucleus0.552
Rank 2 · TkA06G177320 · TK1151
Cell membrane0.052
Rank 3 · TkA06G177320 · TK1151
Endoplasmic reticulum0.049
Rank 4 · TkA06G177320 · TK1151
Mitochondrion0.045
Rank 5 · TkA06G177320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13832zf-HC5HC2H_273-110 aa
PF13920zf-C3HC4_377-124 aa
PF17120zf-RING_1677-120 aa
PF29452FAR1_N77-115 aa
PF26148VPS18_RING_C78-110 aa
PF13639zf-RING_279-122 aa
PF17123zf-RING_1179-108 aa
PF11793FANCL_C79-112 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G177320PF13832zf-HC5HC2H_2731100.07114.0
TkA06G177320PF13920zf-C3HC4_3771240.003817.7
TkA06G177320PF17120zf-RING_16771200.02814.7
TkA06G177320PF29452FAR1_N771150.411.4
TkA06G177320PF26148VPS18_RING_C781100.1113.3
TkA06G177320PF13639zf-RING_2791228.7e-1452.2
TkA06G177320PF17123zf-RING_11791087.8e-0935.8
TkA06G177320PF11793FANCL_C791120.07814.0
TkA06G177320PF13923zf-C3HC4_2801212.5e-0834.3
TkA06G177320PF00097zf-C3HC4801211e-0732.4
TkA06G177320PF13445zf-RING_UBOX801198.2e-0626.4
TkA06G177320PF12861zf-ANAPC11801279e-0626.4
TkA06G177320PF14634zf-RING_5801220.02315.4
TkA06G177320PF23555zf-RING_Vps41801100.03114.6
TkA06G177320PF23412zf_RING_Vps8801100.03514.7
TkA06G177320PF14570zf-RING_4801230.05614.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LQX2Arabidopsis thalianasp|Q9LQX2|MPSR1_ARATH E3 ubiquitin-protein ligase MPSR150.000%Swiss-ProtMedium
Q8LPN7Arabidopsis thalianasp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like39.200%Swiss-ProtMedium
Q940T5Arabidopsis thalianasp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF246.800%Swiss-ProtLow
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP146.700%Swiss-ProtLow

JBrowse

View in Genome Browser