TkA06G174730 | RubberDandelionOmics

Gene overview

TkA06G174730

Reference: TK1151 Chr: Chr06 Coordinates: 45847935-45849655 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1185 bp · TkA06G174730|TK1151|cDNA

ATGCCCCGGATGCTTCAACTCCAAGAGCAATTACGCAACACCAAGAAAGGTGCATCTCCCATTCTTGAGTATTGTCATAATCTCAAACACTTAGCCTATGCTTTACATGATGTCGACAACACTATTTCTGAAATTGAACTCGTTATGCAAATCTTACGTGGTTTACCGCCTTCTTACCAAAGTATTATTGATGTCATAACCAACACCAAACCTTTCCCCTCCTTCATGGAAGCCAAAAACATGCTTCTTCTTCATGAGAA...

CDS

Download CDS FASTA

1185 bp · TkA06G174730|TK1151|CDS

ATGCCCCGGATGCTTCAACTCCAAGAGCAATTACGCAACACCAAGAAAGGTGCATCTCCCATTCTTGAGTATTGTCATAATCTCAAACACTTAGCCTATGCTTTACATGATGTCGACAACACTATTTCTGAAATTGAACTCGTTATGCAAATCTTACGTGGTTTACCGCCTTCTTACCAAAGTATTATTGATGTCATAACCAACACCAAACCTTTCCCCTCCTTCATGGAAGCCAAAAACATGCTTCTTCTTCATGAGAA...

Protein

Download Protein FASTA

394 aa · TkA06G174730|TK1151|PROTEIN

MPRMLQLQEQLRNTKKGASPILEYCHNLKHLAYALHDVDNTISEIELVMQILRGLPPSYQSIIDVITNTKPFPSFMEAKNMLLLHENREESTQQNQVSQFAGIIGSHLNVAAQNQHPYVLYGHLNVAVQHNLPWVQAATAAGSSAPSFPTPAAFLAPSPYAANQAQSAQHYFSAQQQHAAVPGTLHQPTDLASIYQAMSIQPPPDNNYYMDTGASSHMNFNQVDNNVSVSFEPFGFSVKDLDSDALLHRCDRRHVKYPVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G174730`
TK1151 ID	TkA06G174730
OH-1004 ID	LXL04_016640
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	37.400
Protein coverage (%)	TK1151 64.721 / OH-1004 15.998 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA06G174730

Location Chr06:45847935-45849655 (-)

Description Similar to Genome polyprotein (Petunia vein clearing virus (isolate Shepherd)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q94HW2`	Retrovirus-related Pol polyprotein from transposon RE1.	No verified direct reference in this release
`At4g02960`	Retrovirus-related Pol polyprotein from transposon RE2.	No verified direct reference in this release
`UniProt: P92519`	Uncharacterized mitochondrial protein AtMg00810.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016640 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006508 proteolysis Biological Process

GO:0015074 DNA integration Biological Process

GO:0046740 transport of virus in host, cell to cell Biological Process

GO:0003676 nucleic acid binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003887 DNA-directed DNA polymerase activity Molecular Function

GO:0003964 RNA-directed DNA polymerase activity Molecular Function

GO:0004190 aspartic-type endopeptidase activity Molecular Function

GO:0004519 endonuclease activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

vg:921337

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.675

Rank 1 · TkA06G174730 · TK1151

Nucleus0.421

Rank 2 · TkA06G174730 · TK1151

Endoplasmic reticulum0.054

Rank 3 · TkA06G174730 · TK1151

Mitochondrion0.051

Rank 4 · TkA06G174730 · TK1151

Peroxisome0.047

Rank 5 · TkA06G174730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14223Retrotran_gag_25-93 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G174730	`PF14223`	Retrotran_gag_2	5	93	1e-11	45.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q94HW2`	Arabidopsis thaliana	sp\|Q94HW2\|POLR1_ARATH Retrovirus-related Pol polyprotein from transposon RE1	43.600%	Swiss-Prot	Low
`Q9ZT94`	Arabidopsis thaliana	sp\|Q9ZT94\|POLR2_ARATH Retrovirus-related Pol polyprotein from transposon RE2	48.900%	Swiss-Prot	Low
`P92519`	Arabidopsis thaliana	sp\|P92519\|M810_ARATH Uncharacterized mitochondrial protein AtMg00810	53.300%	Swiss-Prot	Low

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