TkA06G162610 | RubberDandelionOmics

Gene overview

TkA06G162610

Reference: TK1151 Chr: Chr06 Coordinates: 42779897-42782320 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1749 bp · TkA06G162610|TK1151|cDNA

CCAAAGGGTAAAACTGTAATATACGCGGCAAGACGGGATCATGTTGGGCTCAACTACCTATATAATACCCCTTCGCCCTATTATTATATCACACAAATTCTTGATATCTCTCCCAAATCAAGTTATTCTCGTTTTTCTATATTCTTCTATTCATAAATCCAATTTCTAGGGTTTTAAGTTCGATCTTCTCGGCTGCTACATTTCCATTACTTGATTACAATCTCAACTAATCGAATCATTGAATGTACTATGGAGTCGAA...

CDS

Download CDS FASTA

1080 bp · TkA06G162610|TK1151|CDS

ATGACAATCGAACATTCCGCCATCGGATTTGAAGGCTACGAAAAAAGGCTAGAAATTTCCTTCACCGACCCAGGAATTTTTGCCGACCCAAAAGGCCTCGGCCTCCGTGCCCTAACAAAAACCCAACTCGACACAATCTTAACCCCCGCCGAATGCACAATCGTTTCATCTCTATCAAACGACTCACTAGACTCATACGTCTTATCAGAATCCAGCCTCTTCGTATACCCATACAAAATCATCATCAAAACATGTGGGAC...

Protein

Download Protein FASTA

359 aa · TkA06G162610|TK1151|PROTEIN

MTIEHSAIGFEGYEKRLEISFTDPGIFADPKGLGLRALTKTQLDTILTPAECTIVSSLSNDSLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILHLSSHLSLTVKSVKYTRGTFIFPKSQPFPHRNFTEEVVTLDKYFKNLESKAYVMGEKWHVYTASSQSQSQTVDYNHHPVLTLEMCMTGLDKKSASVFFKTQSTSASIMTSASGINKILPKSTICDFDFDPCGYSMNAIENDAVSTIHVTPEDGFSYASFEAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G162610`
TK1151 ID	TkA06G162610
OH-1004 ID	LXL04_024227
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 99.721 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G162610

Location Chr06:42779897-42782320 (+)

Description Similar to SAMDC: S-adenosylmethionine decarboxylase proenzyme

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02470`	Essential for biosynthesis of the polyamines spermidine and spermine.	BUD2, encoding an S-adenosylmethionine decarboxylase, is required for Arabidopsis growth and development.2006 · DOI: 10.1038/sj.cr.7310056

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024227 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006596 polyamine biosynthetic process Biological Process

GO:0006597 spermine biosynthetic process Biological Process

GO:0008295 spermidine biosynthetic process Biological Process

GO:0019079 viral genome replication Biological Process

GO:0099402 plant organ development Biological Process

GO:0005829 cytosol Cellular Component

GO:0004014 adenosylmethionine decarboxylase activity Molecular Function

KEGG gene cross-reference

ath:AT3G02470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.766

Rank 1 · TkA06G162610 · TK1151

Nucleus0.504

Rank 2 · TkA06G162610 · TK1151

Mitochondrion0.060

Rank 3 · TkA06G162610 · TK1151

Peroxisome0.034

Rank 4 · TkA06G162610 · TK1151

Endoplasmic reticulum0.028

Rank 5 · TkA06G162610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01536SAM_decarbox9-326 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G162610	`PF01536`	SAM_decarbox	9	326	1.6e-112	376.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q96286`	Arabidopsis thaliana	sp\|Q96286\|DCAM1_ARATH S-adenosylmethionine decarboxylase proenzyme 1	62.600%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card