TkA06G158240 | RubberDandelionOmics

Gene overview

TkA06G158240

Reference: TK1151 Chr: Chr06 Coordinates: 41780643-41781062 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

420 bp · TkA06G158240|TK1151|cDNA

ATGACGAAACTACCCTTAATTGTTTCTGTTTTCATTTTCTTAATTGAATTTACTGAAATAGAAAAGAAAAAAGAAAATATAATTGACCCTCTCTCTACTCTCTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCACCGTCTCTCCTCTCTCTCTCGTGAATCGGCTTTTTGTTGCAAAACATCTCTACAATGCGGGATTTGTGTTTGTTGCAGGTTTCAGACCGGAGAAATCGTAGCCCT...

CDS

Download CDS FASTA

420 bp · TkA06G158240|TK1151|CDS

ATGACGAAACTACCCTTAATTGTTTCTGTTTTCATTTTCTTAATTGAATTTACTGAAATAGAAAAGAAAAAAGAAAATATAATTGACCCTCTCTCTACTCTCTTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCACCGTCTCTCCTCTCTCTCTCGTGAATCGGCTTTTTGTTGCAAAACATCTCTACAATGCGGGATTTGTGTTTGTTGCAGGTTTCAGACCGGAGAAATCGTAGCCCT...

Protein

Download Protein FASTA

139 aa · TkA06G158240|TK1151|PROTEIN

MTKLPLIVSVFIFLIEFTEIEKKKENIIDPLSTLFSPLSLSLSLSLSLSLPHRLSSLSRESAFCCKTSLQCGICVCCRFQTGEIVALKKIKTSKEREGFPLTTLREITIIGCFKHPSLVKMKEVVTNDFDGVYMVIKVI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G158240`
TK1151 ID	TkA06G158240
OH-1004 ID	LXL04_035707
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	54.200
Protein coverage (%)	TK1151 34.532 / OH-1004 8.824 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G158240

Location Chr06:41780643-41781062 (-)

Description Similar to CDKC-1: Cyclin-dependent kinase C-1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2XUW1`	Cyclin-dependent kinase G-2.	No verified direct reference in this release
`Os04g0488000`	Cyclin-dependent kinase G-2.	No verified direct reference in this release
`UniProt: A2X6X1`	Cyclin-dependent kinase G-1.	No verified direct reference in this release
`Os02g0602100`	Cyclin-dependent kinase G-1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035707 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009615 response to virus Biological Process

GO:0009908 flower development Biological Process

GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process

GO:0048440 carpel development Biological Process

GO:0050792 regulation of viral process Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0004693 cyclin-dependent protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT5G10270

ath:AT5G64960

dosa:Os01g0958000

dosa:Os05g0389700

osa:9268645

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.459

Rank 1 · TkA06G158240 · TK1151

Nucleus0.422

Rank 2 · TkA06G158240 · TK1151

Mitochondrion0.130

Rank 3 · TkA06G158240 · TK1151

Endoplasmic reticulum0.095

Rank 4 · TkA06G158240 · TK1151

Cell membrane0.076

Rank 5 · TkA06G158240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase75-136 aa

PF07714PK_Tyr_Ser-Thr80-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G158240	`PF00069`	Pkinase	75	136	9.7e-08	32.4
TkA06G158240	`PF07714`	PK_Tyr_Ser-Thr	80	137	0.033	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A2XUW1`	Oryza sativa subsp. indica	sp\|A2XUW1\|CDKG2_ORYSI Cyclin-dependent kinase G-2	61.000%	Swiss-Prot	Low
`Q7XUF4`	Oryza sativa subsp. japonica	sp\|Q7XUF4\|CDKG2_ORYSJ Cyclin-dependent kinase G-2	61.000%	Swiss-Prot	Low
`A2X6X1`	Oryza sativa subsp. indica	sp\|A2X6X1\|CDKG1_ORYSI Cyclin-dependent kinase G-1	61.700%	Swiss-Prot	Low
`Q6K5F8`	Oryza sativa subsp. japonica	sp\|Q6K5F8\|CDKG1_ORYSJ Cyclin-dependent kinase G-1	61.700%	Swiss-Prot	Low

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