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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G157480
Reference: TK1151 Chr: Chr06 Coordinates: 41550993-41552198 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1083 bp · TkA06G157480|TK1151|cDNA

ATGAACTCCACGCCGTCGTCGCCGGTGGCAAGTTCTAAATGGTCGTATCGTGAACAGGCAGCTCCCAATTGCACAAGATTTTCTGATTACACCGGATTGCTTGCTTCTCTTGTTCGTGAAGAGGGAAATATATATTCGTTGGCGGCAATCGGAGATATGTTGTACACCGGATCTGATAGCAAGAACATTCGCGTTTGGAAGAACCGCAAGGAATTTTCTGGATTCAAATCTAACAGCGGATTAGTTAAAGCGATTGTGAT...

CDS

Download CDS FASTA

1083 bp · TkA06G157480|TK1151|CDS

ATGAACTCCACGCCGTCGTCGCCGGTGGCAAGTTCTAAATGGTCGTATCGTGAACAGGCAGCTCCCAATTGCACAAGATTTTCTGATTACACCGGATTGCTTGCTTCTCTTGTTCGTGAAGAGGGAAATATATATTCGTTGGCGGCAATCGGAGATATGTTGTACACCGGATCTGATAGCAAGAACATTCGCGTTTGGAAGAACCGCAAGGAATTTTCTGGATTCAAATCTAACAGCGGATTAGTTAAAGCGATTGTGAT...

Protein

Download Protein FASTA

360 aa · TkA06G157480|TK1151|PROTEIN

MNSTPSSPVASSKWSYREQAAPNCTRFSDYTGLLASLVREEGNIYSLAAIGDMLYTGSDSKNIRVWKNRKEFSGFKSNSGLVKAIVIADDKIFTGHSDGKIRVWKVSAKNPRVHKKIGTLPNLTSIVEKSMKPKNYTEVRNNHSAIWIKHYDAISSLSLTEDRSLLYSGSWDKTIKVWKVSDFKCLESIPAHDDAVNAESAVTSLVVNPAGTVVYAGLSDGLLHFWERDKLCSGNRVLRCHNAAVLCLAAAGRLVFSGSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G157480
TK1151 IDTkA06G157480
OH-1004 IDLXL04_024273
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)88.000
Protein coverage (%)TK1151 99.722 / OH-1004 98.280
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G157480
LocationChr06:41550993-41552198 (+)
DescriptionSimilar to JGB: Protein JINGUBANG
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26490 Negative regulator of pollen germination. No verified direct reference in this release
At5g40880 Zinc finger CCCH domain-containing protein 59. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0552300 Component of the RACK1 regulatory proteins that play a role in multiple signal transduction pathways. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024273 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009846 pollen germination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ana:alr3466
ath:AT2G26490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.500
Rank 1 · TkA06G157480 · TK1151
Cytoplasm0.371
Rank 2 · TkA06G157480 · TK1151
Cell membrane0.135
Rank 3 · TkA06G157480 · TK1151
Lysosome / Vacuole0.053
Rank 4 · TkA06G157480 · TK1151
Endoplasmic reticulum0.049
Rank 5 · TkA06G157480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11715Beta-prop_Nup120_16021-193 aa
PF24017Beta-prop_SCAP30-226 aa
PF16529Ge1_WD4034-112 aa
PF23381Beta-prop_IFT122_1st35-112 aa
PF25173Beta-prop_WDR3_1st36-67 aa
PF25171Beta-prop_WDR36-Utp21_1st41-136 aa
PF00400WD4042-66 aa
PF25172Beta-prop_WDR3_2nd42-71 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G157480PF11715Beta-prop_Nup120_160211930.0002520.6
TkA06G157480PF24017Beta-prop_SCAP302268.1e-1658.6
TkA06G157480PF16529Ge1_WD40341120.0812.6
TkA06G157480PF23381Beta-prop_IFT122_1st351122.6e-2176.9
TkA06G157480PF25173Beta-prop_WDR3_1st36674.4e-30105.4
TkA06G157480PF25171Beta-prop_WDR36-Utp21_1st411361.5e-0835.1
TkA06G157480PF00400WD4042667.3e-32109.2
TkA06G157480PF25172Beta-prop_WDR3_2nd42717.1e-1865.6
TkA06G157480PF25048Beta-prop_TEP1_C42692.5e-1556.9
TkA06G157480PF24796WDR55421119.7e-1348.5
TkA06G157480PF24105Beta-prop_CAF1B_HIR143761.7e-0834.6
TkA06G157480PF24807WD40_CDC20-Fz451982e-2074.0
TkA06G157480PF24817WD40_WDHD1_1st471298.7e-1968.5
TkA06G157480PF23754Beta-prop_IP5PC_F47671.4e-0628.2
TkA06G157480PF25391WD40_Gbeta481031e-1041.9
TkA06G157480PF25174Beta-prop_THOC3502426e-2381.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48716Arabidopsis thalianasp|O48716|JGB_ARATH Protein JINGUBANG48.200%Swiss-ProtMedium
Q9FKR9Arabidopsis thalianasp|Q9FKR9|C3H59_ARATH Zinc finger CCCH domain-containing protein 5928.700%Swiss-ProtLow
Q6L4F8Oryza sativa subsp. japonicasp|Q6L4F8|GBLPB_ORYSJ Small ribosomal subunit protein RACK1y25.200%Swiss-ProtLow

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