TkA06G149950 | RubberDandelionOmics

Gene overview

TkA06G149950

Reference: TK1151 Chr: Chr06 Coordinates: 39315173-39328824 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2225 bp · TkA06G149950|TK1151|cDNA

TTGCAATTCATTTGCACCCACCACCATACACGTACGAGCAAAACGACAGTCTTTTCTATCACATAATTTACCTTTAATTCTTTCTCGAGTTCACTTTAGTACTTAGGAGAAAACTATTTTATTCCCATGTCTTGATTAGTTTTGGCCAAGTTCCTAGCTATACGGATGTCTCTGTTCCTGAGTGTCTGTGTACCAAGAACGACTGTAAATATATATAGCGAATCAATACTTTTGGTTATAATCCAGCCTTGTAGGGCCAC...

CDS

Download CDS FASTA

1674 bp · TkA06G149950|TK1151|CDS

ATGCCCACACCCCATGATATGATGCATGCCAAGAAAAAAGAGCTCAAAAGCAATACCATGAAGAGGACTACCGAATGGATTTTCTCACAGGACATCCCTAGTGATGTAACAATCAACGTCAGTGGCATTTCTTTTTCATTACACAAGTTTCCATTAGTGTCAAAATGTGGTTACATAAGGAAACTCATGTCCAACTTTAAAGAGAGTGACCACATAATCGAAATCAATGGAATCCCCGGTGGGCCCCAAGGATTTGAACT...

Protein

Download Protein FASTA

557 aa · TkA06G149950|TK1151|PROTEIN

MPTPHDMMHAKKKELKSNTMKRTTEWIFSQDIPSDVTINVSGISFSLHKFPLVSKCGYIRKLMSNFKESDHIIEINGIPGGPQGFELAAKFCYGINFELTIQNIAIARCVAEFLEMTENYAIGNLIARTEAYINEVGLKSLACVISILQTSETLLPVSENIKLITRCVDSIAFIVMKECEFSLSTSGGCTTSDGLDSSSSSFSHLKVVDWWAEDLVTLKIHTFQRVLLAMISRGYNKCALGPILTFYAQKCLQDLEIFGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA06G149950`
TK1151 ID	TkA06G149950
OH-1004 ID	LXL04_036778
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	39.700
Protein coverage (%)	TK1151 97.127 / OH-1004 97.185 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA06G149950

Location Chr06:39315173-39328824 (-)

Description Similar to At5g48800: BTB/POZ domain-containing protein At5g48800

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67385`	Acts as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (Probable).	No verified direct reference in this release
`At3g49970`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g48800`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`UniProt: Q682S0`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	No verified direct reference in this release
`At3g08570`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036778 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G03010

ath:AT2G47860

ath:AT3G08570

ath:AT3G08660

ath:AT5G48800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.499

Rank 1 · TkA06G149950 · TK1151

Cytoplasm0.418

Rank 2 · TkA06G149950 · TK1151

Cell membrane0.120

Rank 3 · TkA06G149950 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA06G149950 · TK1151

Lysosome / Vacuole0.030

Rank 5 · TkA06G149950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00651BTB29-133 aa

PF03000NPH3209-445 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA06G149950	`PF00651`	BTB	29	133	1.2e-06	29.4
TkA06G149950	`PF03000`	NPH3	209	445	6.7e-75	252.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q66GP0`	Arabidopsis thaliana	sp\|Q66GP0\|SR1P1_ARATH BTB/POZ domain-containing protein SR1IP1	50.200%	Swiss-Prot	High
`Q9SN21`	Arabidopsis thaliana	sp\|Q9SN21\|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970	46.400%	Swiss-Prot	Medium
`Q9FKB6`	Arabidopsis thaliana	sp\|Q9FKB6\|Y5880_ARATH BTB/POZ domain-containing protein At5g48800	39.600%	Swiss-Prot	Medium
`Q682S0`	Arabidopsis thaliana	sp\|Q682S0\|RPT2_ARATH Root phototropism protein 2	37.100%	Swiss-Prot	Medium
`Q9C9Z7`	Arabidopsis thaliana	sp\|Q9C9Z7\|Y3857_ARATH BTB/POZ domain-containing protein At3g08570	38.900%	Swiss-Prot	Medium

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