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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA06G146860
Reference: TK1151 Chr: Chr06 Coordinates: 38492007-38501070 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1532 bp · TkA06G146860|TK1151|cDNA

CGAACATAAACGAACTTTCCGCCGAACGGTTCACGAACTGTTCGGTTCGTTTACAGCCCTACTCAAGTGAGAGGAAAGTGACTAATTATAATTCTATCCCCCATTATTTATCACCAAAAGGAAAGAAAAAAAAAAAGCCAATCCTTTTTCTTCCCGCCGCAATCGCACTTGGTCCATCTTCATCGGCCAATCGGCCATCTCCTATGCACAAAGACCATCTTCTTCGGCCATCTCCTTCCCGAATCGCTGCTGCTGCTTCG...

CDS

Download CDS FASTA

903 bp · TkA06G146860|TK1151|CDS

ATGTTAATGCCGGCGAGAATACGCCTCTTCACCCTTCGCACCTCTTCACTCCTTCCGTCATCTTCCTCGCCGTCTCCTTTTTCATTCTCTTTCAGAACCTCCATCTCCCACTCTCACTCCGCTCCTTCCCACCATGTCTCCGCCACTAAAACCCCCAAAATCTCCATCTCCGACACCGCCAAATTCGTCCGAACGGTCCTGTTTATCCCGCCCGGAACAGACCCAGAAGAAGTCACCGACGACATGATCTTACCCGGCTC...

Protein

Download Protein FASTA

300 aa · TkA06G146860|TK1151|PROTEIN

MLMPARIRLFTLRTSSLLPSSSSPSPFSFSFRTSISHSHSAPSHHVSATKTPKISISDTAKFVRTVLFIPPGTDPEEVTDDMILPGSNVVLGPYAGDAKVKEVQFIGSSIRPKDCPKDDRPEFAMLGRSNVGKSSLINSLVRKKEVALTSKKPGKTQLINHFLVNRSWYLVDLPGYGFANAPESARMDWSSFTKGYFLNRESLVSVLLLVDASVPPQKIDIDCANWLGRNNIPMTIVFTKCDKVKNSKGKRPDENIKSFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA06G146860
TK1151 IDTkA06G146860
OH-1004 IDLXL04_024409
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA06G146860
LocationChr06:38492007-38501070 (-)
DescriptionSimilar to EMB2001: GTP-binding protein At2g22870
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g22870 GTP-binding protein At2g22870. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_024409 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009507 chloroplast Cellular Component
GO:0005525 GTP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G22870
bfr:BF2048
bfs:BF9343_2016
gfo:GFO_2778
pdi:BDI_1441
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.872
Rank 1 · TkA06G146860 · TK1151
Plastid0.106
Rank 2 · TkA06G146860 · TK1151
Nucleus0.054
Rank 3 · TkA06G146860 · TK1151
Cytoplasm0.045
Rank 4 · TkA06G146860 · TK1151
Cell membrane0.014
Rank 5 · TkA06G146860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09439SRPRB55-69 aa
PF05621TniB115-147 aa
PF09439SRPRB120-219 aa
PF00009GTP_EFTU122-146 aa
PF01926MMR_HSR1123-240 aa
PF02421FeoB_N123-249 aa
PF03193RsgA_GTPase124-175 aa
PF08477Roc124-144 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA06G146860PF09439SRPRB55690.04813.8
TkA06G146860PF05621TniB1151470.1712.0
TkA06G146860PF09439SRPRB1202190.04813.8
TkA06G146860PF00009GTP_EFTU1221462.1e-0524.9
TkA06G146860PF01926MMR_HSR11232406.4e-1968.9
TkA06G146860PF02421FeoB_N1232496.1e-0523.3
TkA06G146860PF03193RsgA_GTPase1241757.1e-0729.9
TkA06G146860PF08477Roc1241440.02615.5
TkA06G146860PF00350Dynamin_N1251440.00517.6
TkA06G146860PF04548AIG11251460.311.1
TkA06G146860PF08477Roc1521650.02615.5
TkA06G146860PF00350Dynamin_N1642140.00517.6
TkA06G146860PF00009GTP_EFTU2062912.1e-0524.9
TkA06G146860PF05621TniB2162530.1712.0
TkA06G146860PF13872AAA_342252940.3210.6
TkA06G146860PF00350Dynamin_N2272600.00517.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O81004Arabidopsis thalianasp|O81004|Y2287_ARATH GTP-binding protein At2g2287066.900%Swiss-ProtHigh

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